Variant report

Variant	rs374720168
Chromosome Location	chr17:17308466-17308467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17306217..17309179-chr17:17398363..17401256,2	MCF-7	breast:
2	chr17:17304591..17306249-chr17:17306462..17308766,2	MCF-7	breast:
3	chr17:17297235..17298837-chr17:17306470..17308847,2	K562	blood:

Variant related genes	Relation type
ENSG00000108551	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	esv1010969	chr17:17304118-17308747	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1058849	chr17:17308009-17348548	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17299800-17310400	Enhancers	Primary hematopoietic stem cells	blood
2	chr17:17302000-17318800	Weak transcription	Right Atrium	heart
3	chr17:17305000-17311400	Weak transcription	Pancreas	Pancrea
4	chr17:17305200-17309600	Weak transcription	Esophagus	oesophagus
5	chr17:17305800-17309200	Enhancers	Primary B cells from peripheral blood	blood
6	chr17:17306000-17310000	Enhancers	Fetal Muscle Leg	muscle
7	chr17:17306200-17309600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr17:17306400-17308800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr17:17306400-17309600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr17:17306600-17309200	Weak transcription	HepG2	liver
11	chr17:17306600-17315400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr17:17306800-17309200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr17:17306800-17309200	Weak transcription	Hela-S3	cervix
14	chr17:17307000-17311400	Weak transcription	Osteobl	bone
15	chr17:17307200-17316600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr17:17307600-17308800	Flanking Active TSS	Dnd41	blood
17	chr17:17307600-17309800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr17:17307600-17310000	Enhancers	Primary T cells fromperipheralblood	blood
19	chr17:17307600-17310200	Enhancers	Brain Germinal Matrix	brain
20	chr17:17307800-17308800	Weak transcription	Brain Anterior Caudate	brain
21	chr17:17307800-17308800	Enhancers	Fetal Muscle Trunk	muscle
22	chr17:17307800-17309000	Weak transcription	Adipose Nuclei	Adipose
23	chr17:17307800-17309200	Weak transcription	Spleen	Spleen
24	chr17:17307800-17309600	Weak transcription	Lung	lung
25	chr17:17307800-17309800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr17:17307800-17309800	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr17:17307800-17310400	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr17:17307800-17310400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr17:17307800-17311800	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr17:17307800-17313000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr17:17308000-17310400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr17:17308000-17310600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr17:17308000-17310800	Enhancers	Primary T cells from cord blood	blood
34	chr17:17308000-17310800	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr17:17308000-17311000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr17:17308000-17311600	Weak transcription	HUVEC	blood vessel
37	chr17:17308000-17313400	Weak transcription	Brain Substantia Nigra	brain
38	chr17:17308000-17313600	Weak transcription	Fetal Brain Male	brain
39	chr17:17308000-17314400	Enhancers	Fetal Thymus	thymus
40	chr17:17308000-17322200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr17:17308200-17310600	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr17:17308200-17310600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr17:17308200-17311600	Enhancers	Thymus	Thymus
44	chr17:17308200-17316600	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr17:17308400-17309400	Weak transcription	Primary B cells from cord blood	blood
46	chr17:17308400-17310400	Weak transcription	Fetal Brain Female	brain
47	chr17:17308400-17312000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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