Variant report

Variant	rs374859386
Chromosome Location	chr11:63756059-63756060
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63739151..63744415-chr11:63752010..63756596,9	MCF-7	breast:
2	chr1:149857624..149859749-chr11:63753842..63756794,2	MCF-7	breast:
3	chr11:63754118..63755795-chr11:63756006..63757666,2	MCF-7	breast:
4	chr11:63754724..63756802-chr11:63908470..63911045,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184270	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000256100	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000176340	Chromatin interaction
ENSG00000167770	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468590	chr11:63639881-63783352	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv555181	chr11:63639881-63783352	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv897629	chr11:63664882-63866959	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv897630	chr11:63664882-63924446	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
7	nsv897639	chr11:63691049-63844683	Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	esv1849906	chr11:63719273-63880383	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
9	nsv1042075	chr11:63732454-63813164	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	esv29993	chr11:63738642-63864211	Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	nsv897640	chr11:63744152-63835611	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv897641	chr11:63744152-63844683	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
13	nsv897642	chr11:63744152-63866959	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
14	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
15	nsv897643	chr11:63754986-63844683	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
16	nsv897644	chr11:63754986-63849330	Bivalent Enhancer Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
17	nsv897645	chr11:63754986-63859751	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
18	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
19	nsv897647	chr11:63755961-63835611	Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63754600-63758600	Weak transcription	Aorta	Aorta
2	chr11:63754800-63756400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:63754800-63757600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:63754800-63767600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:63755000-63756200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
6	chr11:63755000-63756200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr11:63755000-63756200	Genic enhancers	Fetal Muscle Trunk	muscle
8	chr11:63755000-63766600	Weak transcription	Right Atrium	heart
9	chr11:63755000-63769000	Weak transcription	Fetal Kidney	kidney
10	chr11:63755200-63756200	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:63755200-63756400	Genic enhancers	Esophagus	oesophagus
12	chr11:63755200-63756400	Genic enhancers	K562	blood
13	chr11:63755200-63757600	Weak transcription	Left Ventricle	heart
14	chr11:63755200-63757600	Weak transcription	HSMMtube	muscle
15	chr11:63755200-63757800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:63755200-63761200	Weak transcription	HUVEC	blood vessel
17	chr11:63755200-63762000	Weak transcription	Small Intestine	intestine
18	chr11:63755200-63766600	Weak transcription	Stomach Mucosa	stomach
19	chr11:63755200-63775200	Weak transcription	Psoas Muscle	Psoas
20	chr11:63755400-63756200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:63755400-63756200	Weak transcription	Primary T cells from cord blood	blood
22	chr11:63755400-63756200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:63755400-63756400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:63755400-63756400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:63755400-63756600	Strong transcription	Brain Germinal Matrix	brain
26	chr11:63755400-63756600	Strong transcription	Osteobl	bone
27	chr11:63755400-63756800	Weak transcription	Fetal Lung	lung
28	chr11:63755400-63757400	Weak transcription	Gastric	stomach
29	chr11:63755400-63757600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr11:63755400-63757600	Weak transcription	Colon Smooth Muscle	Colon
31	chr11:63755400-63757600	Weak transcription	Pancreas	Pancrea
32	chr11:63755400-63757600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr11:63755400-63757600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr11:63755400-63757600	Weak transcription	NH-A	brain
35	chr11:63755400-63758000	Weak transcription	HSMM	muscle
36	chr11:63755400-63758400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:63755400-63758400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr11:63755400-63758400	Weak transcription	NHDF-Ad	bronchial
39	chr11:63755400-63758600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr11:63755400-63759000	Weak transcription	Colonic Mucosa	Colon
41	chr11:63755400-63759400	Strong transcription	H9 Cell Line	embryonic stem cell
42	chr11:63755400-63759600	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr11:63755400-63759600	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr11:63755400-63760400	Weak transcription	Brain Angular Gyrus	brain
45	chr11:63755400-63762400	Weak transcription	Brain Substantia Nigra	brain
46	chr11:63755400-63765400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr11:63755400-63765400	Strong transcription	Fetal Stomach	stomach
48	chr11:63755400-63765600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:63755400-63766200	Strong transcription	Fetal Muscle Leg	muscle
50	chr11:63755400-63766200	Strong transcription	Fetal Thymus	thymus

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