Variant report

Variant	rs3748998
Chromosome Location	chr2:114631520-114631521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:114623730..114625967-chr2:114629476..114631901,2	K562	blood:
2	chr2:114630936..114633631-chr2:114645120..114648314,3	MCF-7	breast:
3	chr2:114623730..114628416-chr2:114629384..114634223,5	K562	blood:

Variant related genes	Relation type
ENSG00000270019	Chromatin interaction
ENSG00000115091	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11123212	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs12466636	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12478890	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12618768	0.90[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs1566813	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17046870	0.85[CEU][hapmap]
rs1825738	0.93[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2046543	1.00[CEU][hapmap]
rs275417	1.00[CEU][hapmap]
rs276821	1.00[CEU][hapmap]
rs3912541	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3982221	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4341941	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4849297	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6542183	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6542185	0.92[CEU][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6705687	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72835432	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7595375	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7602093	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs904498	0.93[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs974057	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114596800-114632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr2:114621200-114639600	Weak transcription	GM12878-XiMat	blood
3	chr2:114621400-114638400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr2:114625800-114633800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr2:114626200-114631600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr2:114626400-114635000	Weak transcription	Primary B cells from cord blood	blood
7	chr2:114626600-114634200	Weak transcription	Thymus	Thymus
8	chr2:114626600-114634400	Weak transcription	Pancreas	Pancrea
9	chr2:114626800-114635000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr2:114629200-114631800	Enhancers	NH-A	brain
11	chr2:114629800-114632400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr2:114630000-114632000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:114630200-114634200	Weak transcription	NHLF	lung
14	chr2:114630200-114634600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:114630200-114635000	Weak transcription	HSMM	muscle
16	chr2:114630200-114635200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:114630400-114634200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:114630400-114635000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr2:114630400-114635000	Weak transcription	HSMMtube	muscle
20	chr2:114630400-114635000	Weak transcription	NHDF-Ad	bronchial
21	chr2:114630400-114635200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr2:114630400-114635200	Weak transcription	Osteobl	bone
23	chr2:114630400-114635400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr2:114631200-114631800	Enhancers	Adipose Nuclei	Adipose
25	chr2:114631200-114631800	Enhancers	Fetal Thymus	thymus
26	chr2:114631200-114632000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr2:114631200-114632000	Enhancers	Hela-S3	cervix
28	chr2:114631200-114632400	Enhancers	HUVEC	blood vessel
29	chr2:114631200-114632600	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr2:114631400-114631600	Enhancers	Primary T cells from cord blood	blood
31	chr2:114631400-114631600	Enhancers	Left Ventricle	heart
32	chr2:114631400-114631800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr2:114631400-114631800	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr2:114631400-114631800	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr2:114631400-114631800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr2:114631400-114632000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr2:114631400-114632000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr2:114631400-114632000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr2:114631400-114632200	Enhancers	HMEC	breast
40	chr2:114631400-114633400	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr2:114631400-114635200	Weak transcription	Small Intestine	intestine
42	chr2:114631400-114644000	Weak transcription	Spleen	Spleen

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