Variant report

Variant	rs276821
Chromosome Location	chr2:114752390-114752391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10176461	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs156667	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs156713	0.84[ASN][1000 genomes]
rs156731	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17046870	0.85[CEU][hapmap]
rs1825738	0.93[CEU][hapmap];0.89[MEX][hapmap]
rs2046543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs275417	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs276316	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs276318	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs276819	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3748998	1.00[CEU][hapmap]
rs3912541	0.81[AMR][1000 genomes]
rs6542185	0.91[CEU][hapmap]
rs6705687	1.00[CEU][hapmap]
rs6741208	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7606387	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs904498	0.93[CEU][hapmap]
rs974057	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874904	chr2:114751691-115605062	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs276821	ZC3H8	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114736200-114761000	Weak transcription	HSMMtube	muscle
2	chr2:114737800-114754400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:114739600-114752600	Weak transcription	NH-A	brain
4	chr2:114741200-114761000	Weak transcription	HSMM	muscle
5	chr2:114746200-114752800	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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