Variant report

Variant	rs156713
Chromosome Location	chr2:114756316-114756317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10176461	0.82[ASN][1000 genomes]
rs11675137	0.82[ASN][1000 genomes]
rs11681666	0.82[ASN][1000 genomes]
rs12995005	0.85[CEU][hapmap];0.92[MEX][hapmap];0.81[TSI][hapmap]
rs13421045	0.89[ASN][1000 genomes]
rs1394165	0.95[CEU][hapmap]
rs156667	0.86[ASN][1000 genomes]
rs17045861	0.95[CEU][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap]
rs2046543	0.87[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs276316	0.85[ASN][1000 genomes]
rs276318	0.84[ASN][1000 genomes]
rs276821	0.87[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs62169941	0.80[ASN][1000 genomes]
rs6741208	0.84[ASN][1000 genomes]
rs7606387	0.85[ASN][1000 genomes]
rs9941677	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874904	chr2:114751691-115605062	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs156713	CHCHD5	cis	cerebellum	SCAN
rs156713	MGC70863	trans	multi-tissue	Pritchard
rs156713	FZD7	trans	parietal	SCAN
rs156713	RPL23AP7	cis	multi-tissue	Pritchard

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114736200-114761000	Weak transcription	HSMMtube	muscle
2	chr2:114741200-114761000	Weak transcription	HSMM	muscle
3	chr2:114755200-114758000	Weak transcription	HepG2	liver
4	chr2:114755600-114768000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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