Variant report

Variant	rs276819
Chromosome Location	chr2:114753307-114753308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10176461	0.84[ASN][1000 genomes]
rs156667	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs156731	0.84[AMR][1000 genomes]
rs2046543	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs275417	0.83[AMR][1000 genomes]
rs276316	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs276318	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs276821	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6741208	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7606387	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874904	chr2:114751691-115605062	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114736200-114761000	Weak transcription	HSMMtube	muscle
2	chr2:114737800-114754400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:114741200-114761000	Weak transcription	HSMM	muscle
4	chr2:114753000-114754000	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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