Variant report

Variant	rs3751617
Chromosome Location	chr15:52605890-52605891
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52584675..52589116-chr15:52605862..52610678,6	MCF-7	breast:
2	chr15:52603895..52607555-chr15:52612385..52616667,4	MCF-7	breast:
3	chr15:52605031..52607219-chr3:162453213..162454978,2	MCF-7	breast:
4	chr15:52604847..52607101-chr15:52623641..52625767,2	K562	blood:

Variant related genes	Relation type
ENSG00000128833	Chromatin interaction
ENSG00000197535	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1104800	1.00[CHB][hapmap]
rs13329402	1.00[CHB][hapmap]
rs16964915	1.00[CHB][hapmap]
rs2242059	1.00[CHB][hapmap]
rs2242060	1.00[JPT][hapmap]
rs2305419	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2305420	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2414138	1.00[CHB][hapmap]
rs2414143	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3751615	1.00[JPT][hapmap]
rs3751618	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3794562	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4528514	1.00[ASN][1000 genomes]
rs4624108	1.00[CHB][hapmap]
rs7168251	1.00[CHB][hapmap]
rs8030307	1.00[CHB][hapmap]
rs8040369	1.00[CHB][hapmap]
rs9920739	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52593600-52608600	Weak transcription	Fetal Brain Male	brain
2	chr15:52595400-52610800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:52595400-52614200	Weak transcription	Fetal Lung	lung
4	chr15:52595600-52609800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:52595800-52628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:52596000-52608400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr15:52596000-52608800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr15:52596000-52611000	Weak transcription	Fetal Stomach	stomach
9	chr15:52596200-52623600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:52596400-52608600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr15:52597600-52608600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr15:52597800-52629600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:52597800-52643400	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr15:52598400-52608400	Weak transcription	Brain Hippocampus Middle	brain
15	chr15:52599200-52611000	Weak transcription	NHLF	lung
16	chr15:52599400-52611000	Weak transcription	Fetal Thymus	thymus
17	chr15:52599400-52611000	Weak transcription	Thymus	Thymus
18	chr15:52599800-52611000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr15:52599800-52611000	Weak transcription	A549	lung
20	chr15:52600400-52607400	Weak transcription	Colon Smooth Muscle	Colon
21	chr15:52600400-52611200	Weak transcription	Colonic Mucosa	Colon
22	chr15:52600600-52611000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr15:52600600-52624200	Weak transcription	Liver	Liver
24	chr15:52600800-52622800	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr15:52600800-52646600	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr15:52601000-52606800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr15:52601000-52608600	Weak transcription	Brain Anterior Caudate	brain
28	chr15:52601000-52610000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr15:52601000-52611000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:52601000-52622600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr15:52601000-52643400	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr15:52601200-52606400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr15:52601200-52611000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:52601200-52615200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr15:52601200-52622600	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr15:52601400-52606000	Strong transcription	Fetal Brain Female	brain
37	chr15:52601400-52609800	Weak transcription	Gastric	stomach
38	chr15:52601400-52611000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:52601400-52611000	Weak transcription	Right Atrium	heart
40	chr15:52601400-52612200	Weak transcription	Right Ventricle	heart
41	chr15:52601600-52606400	Strong transcription	Stomach Smooth Muscle	stomach
42	chr15:52601600-52607200	Strong transcription	Adipose Nuclei	Adipose
43	chr15:52601600-52622400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr15:52601600-52622800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr15:52601800-52608400	Weak transcription	Fetal Muscle Leg	muscle
46	chr15:52601800-52611000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:52601800-52611000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr15:52601800-52616600	Strong transcription	Primary B cells from cord blood	blood
49	chr15:52601800-52621400	Weak transcription	Psoas Muscle	Psoas
50	chr15:52602000-52608400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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