Variant report

Variant	rs3752849
Chromosome Location	chr11:8729057-8729058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:8728912-8729696	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8728472..8730184-chr11:8736680..8739477,2	K562	blood:

Variant related genes	Relation type
ST5	TF binding region
ENSG00000166444	Chromatin interaction

rs_ID	r²[population]
rs10840109	0.81[ASN][1000 genomes]
rs10840110	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[ASN][1000 genomes]
rs11042037	0.86[EUR][1000 genomes]
rs1104773	1.00[CEU][hapmap];0.89[MKK][hapmap];0.87[TSI][hapmap]
rs12363135	0.86[EUR][1000 genomes]
rs4061048	1.00[CEU][hapmap]
rs4061049	1.00[CEU][hapmap]
rs6483727	0.84[ASN][1000 genomes]
rs6483729	0.84[ASN][1000 genomes]
rs7933677	0.84[ASN][1000 genomes]
rs7941844	0.84[ASN][1000 genomes]

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8713200-8730000	Strong transcription	Liver	Liver
2	chr11:8715400-8733600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:8719600-8737000	Weak transcription	Hela-S3	cervix
4	chr11:8720000-8738200	Weak transcription	Fetal Kidney	kidney
5	chr11:8720200-8731200	Strong transcription	Fetal Intestine Small	intestine
6	chr11:8720600-8729600	Strong transcription	Fetal Intestine Large	intestine
7	chr11:8721600-8729200	Weak transcription	Fetal Brain Female	brain
8	chr11:8721600-8737000	Strong transcription	Lung	lung
9	chr11:8721800-8731000	Weak transcription	Small Intestine	intestine
10	chr11:8721800-8736200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:8722000-8730400	Strong transcription	Fetal Lung	lung
12	chr11:8722000-8735800	Strong transcription	Placenta Amnion	Placenta Amnion
13	chr11:8722000-8738800	Weak transcription	A549	lung
14	chr11:8722200-8730600	Strong transcription	Placenta	Placenta
15	chr11:8722200-8731000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:8722200-8731000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:8722200-8735400	Weak transcription	HUVEC	blood vessel
18	chr11:8722400-8729400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:8722400-8738800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:8722600-8729400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:8722600-8729600	Strong transcription	NHLF	lung
22	chr11:8722600-8730400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:8722800-8730600	Strong transcription	HSMM	muscle
24	chr11:8722800-8730800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:8722800-8730800	Weak transcription	HMEC	breast
26	chr11:8722800-8735600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:8722800-8739200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:8723200-8739200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:8723400-8729800	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr11:8723600-8729600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr11:8723600-8729600	Strong transcription	Duodenum Mucosa	Duodenum
32	chr11:8723600-8729600	Strong transcription	HSMMtube	muscle
33	chr11:8723600-8730800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr11:8723800-8729400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:8723800-8730000	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr11:8723800-8730800	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr11:8723800-8735800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:8723800-8745200	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr11:8724000-8729800	Strong transcription	Esophagus	oesophagus
40	chr11:8724000-8730000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr11:8724000-8736800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr11:8724200-8729200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr11:8724200-8729600	Strong transcription	Colonic Mucosa	Colon
44	chr11:8724200-8730800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr11:8724400-8729400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:8724800-8729600	Strong transcription	NHDF-Ad	bronchial
47	chr11:8725000-8729400	Weak transcription	Aorta	Aorta
48	chr11:8725400-8738800	Strong transcription	Gastric	stomach
49	chr11:8725600-8729200	Strong transcription	Spleen	Spleen
50	chr11:8725600-8732000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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