Variant report

Variant	rs7941844
Chromosome Location	chr11:8713651-8713652
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:34)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:34 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr11:8713575-8713703	K562	blood:	n/a	n/a
2	POLR2A	chr11:8712944-8713853	GM12878	blood:	n/a	n/a
3	POLR2A	chr11:8712959-8716030	HepG2	liver:	n/a	n/a
4	POLR2A	chr11:8712869-8716340	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr11:8712938-8715258	GM12892	blood:	n/a	n/a
6	POLR2A	chr11:8713585-8713709	GM12878	blood:	n/a	n/a
7	POLR2A	chr11:8703054-8722039	HepG2	liver:	n/a	n/a
8	POLR2A	chr11:8702980-8720607	MCF10A-Er-Src	breast:	n/a	n/a
9	POLR2A	chr11:8712815-8716294	GM12892	blood:	n/a	n/a
10	POLR2A	chr11:8713156-8715208	K562	blood:	n/a	n/a
11	POLR2A	chr11:8713482-8716612	HepG2	liver:	n/a	n/a
12	POLR2A	chr11:8713641-8715408	K562	blood:	n/a	n/a
13	POLR2A	chr11:8707326-8716047	MCF10A-Er-Src	breast:	n/a	n/a
14	POLR2A	chr11:8712946-8713700	GM12891	blood:	n/a	n/a
15	POLR2A	chr11:8712836-8716179	H1-hESC	embryonic stem cell:	n/a	n/a
16	POLR2A	chr11:8712939-8713728	Hela-S3	cervix:	n/a	n/a
17	POLR2A	chr11:8712930-8716010	GM12892	blood:	n/a	n/a
18	POLR2A	chr11:8713003-8716047	K562	blood:	n/a	n/a
19	POLR2A	chr11:8712899-8716153	Hela-S3	cervix:	n/a	n/a
20	POLR2A	chr11:8712840-8716258	K562	blood:	n/a	n/a
21	POLR2A	chr11:8712864-8716311	GM12892	blood:	n/a	n/a
22	POLR2A	chr11:8712893-8716033	GM12891	blood:	n/a	n/a
23	POLR2A	chr11:8713411-8714036	H1-hESC	embryonic stem cell:	n/a	n/a
24	POLR2A	chr11:8703209-8716167	H1-hESC	embryonic stem cell:	n/a	n/a
25	POLR2A	chr11:8712929-8716088	H1-hESC	embryonic stem cell:	n/a	n/a
26	POLR2A	chr11:8712966-8714255	K562	blood:	n/a	n/a
27	POLR2A	chr11:8706470-8718381	A549	lung:	n/a	n/a
28	POLR2A	chr11:8708092-8716216	IMR90	lung:	n/a	n/a
29	POLR2A	chr11:8713095-8713785	Hela-S3	cervix:	n/a	n/a
30	POLR2A	chr11:8712839-8716621	Hela-S3	cervix:	n/a	n/a
31	POLR2A	chr11:8712888-8716455	K562	blood:	n/a	n/a
32	POLR2A	chr11:8712953-8715898	K562	blood:	n/a	n/a
33	POLR2A	chr11:8703113-8722297	HepG2	liver:	n/a	n/a
34	POLR2A	chr11:8712962-8716266	GM12891	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:8712215..8714254-chr11:8934195..8936009,2	MCF-7	breast:
2	chr11:8709069..8714690-chr11:8738952..8744779,10	MCF-7	breast:
3	chr11:8630374..8632927-chr11:8712700..8714781,2	K562	blood:
4	chr11:8712583..8715464-chr11:8715997..8718861,3	MCF-7	breast:
5	chr11:8712091..8714055-chr11:8779721..8782180,2	K562	blood:
6	chr11:8385561..8387453-chr11:8711984..8714377,2	K562	blood:
7	chr11:8711697..8714687-chr11:8851727..8854512,2	K562	blood:
8	chr11:8709479..8712307-chr11:8712972..8716902,4	MCF-7	breast:
9	chr11:8709503..8714356-chr11:8719036..8721571,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254665	TF binding region
ENSG00000166441	Chromatin interaction
ENSG00000166444	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10840109	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10840110	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2270955	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3752849	0.84[ASN][1000 genomes]
rs4670	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6483727	0.89[ASN][1000 genomes]
rs6483729	0.89[ASN][1000 genomes]
rs7933677	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8710800-8714400	Weak transcription	Pancreas	Pancrea
2	chr11:8710800-8721200	Weak transcription	Small Intestine	intestine
3	chr11:8711000-8714000	Weak transcription	Lung	lung
4	chr11:8711000-8714000	Weak transcription	Ovary	ovary
5	chr11:8711000-8718400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:8711000-8720000	Weak transcription	Stomach Mucosa	stomach
7	chr11:8711200-8713800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:8711200-8713800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:8711200-8714000	Weak transcription	Aorta	Aorta
10	chr11:8711200-8714200	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:8711200-8714200	Weak transcription	Fetal Kidney	kidney
12	chr11:8711200-8714400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:8711200-8715800	Weak transcription	Fetal Brain Male	brain
14	chr11:8711200-8717000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr11:8711400-8714000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:8711400-8714800	Weak transcription	Fetal Brain Female	brain
17	chr11:8711400-8717000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:8711400-8718800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr11:8711400-8720400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:8711400-8721000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr11:8711600-8713800	Weak transcription	Brain Substantia Nigra	brain
22	chr11:8711600-8713800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr11:8711600-8714000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr11:8711600-8714200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:8711600-8715200	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr11:8711600-8718800	Weak transcription	Fetal Heart	heart
27	chr11:8711600-8720200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:8711600-8720400	Strong transcription	Fetal Muscle Leg	muscle
29	chr11:8711600-8720800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:8711600-8721400	Weak transcription	Primary B cells from cord blood	blood
31	chr11:8711800-8713800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr11:8711800-8713800	Strong transcription	HMEC	breast
33	chr11:8711800-8713800	Weak transcription	HUVEC	blood vessel
34	chr11:8711800-8714000	Strong transcription	Osteobl	bone
35	chr11:8711800-8714200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr11:8711800-8714400	Strong transcription	NHLF	lung
37	chr11:8711800-8716400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:8711800-8719800	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr11:8711800-8720200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:8711800-8720400	Strong transcription	NH-A	brain
41	chr11:8711800-8720600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:8711800-8720800	Strong transcription	HSMM	muscle
43	chr11:8711800-8721200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr11:8711800-8721200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:8711800-8721200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:8711800-8722200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:8711800-8724200	Weak transcription	Thymus	Thymus
48	chr11:8712000-8714000	Weak transcription	HepG2	liver
49	chr11:8712000-8714200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:8712000-8719200	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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