The 2.0 version of rSNPBase

Variant report

Variant rs3754467
Chromosome Location chr1:158977357-158977358
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:158968600-158977400 Weak transcription Primary T regulatory cells fromperipheralblood blood
2 chr1:158969000-158977400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr1:158969000-158978200 Weak transcription Primary T cells fromperipheralblood blood
4 chr1:158970000-158978600 Weak transcription Esophagus oesophagus
5 chr1:158970200-158978600 Weak transcription Psoas Muscle Psoas
6 chr1:158970200-158978800 Weak transcription Duodenum Mucosa Duodenum
7 chr1:158970200-158979200 Weak transcription Aorta Aorta
8 chr1:158970800-158980800 Weak transcription Pancreas Pancrea
9 chr1:158971000-158978400 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr1:158971200-158978400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr1:158971200-158978400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr1:158971200-158978400 Weak transcription HSMM muscle
13 chr1:158971200-158978600 Weak transcription Brain Angular Gyrus brain
14 chr1:158971200-158978600 Weak transcription Rectal Smooth Muscle rectum
15 chr1:158971200-158978800 Weak transcription HSMMtube muscle
16 chr1:158971400-158978400 Weak transcription Hela-S3 cervix
17 chr1:158971800-158978600 Weak transcription Duodenum Smooth Muscle Duodenum
18 chr1:158971800-158979800 Weak transcription Colon Smooth Muscle Colon
19 chr1:158972000-158979600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
20 chr1:158974800-158977600 Enhancers Small Intestine intestine
21 chr1:158974800-158977800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
22 chr1:158974800-158978400 Weak transcription Rectal Mucosa Donor 31 rectum
23 chr1:158975000-158977600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
24 chr1:158975000-158978800 Enhancers Primary B cells from peripheral blood blood
25 chr1:158975000-158979800 Weak transcription Lung lung
26 chr1:158975400-158977600 Enhancers Primary neutrophils fromperipheralblood blood
27 chr1:158975400-158978200 Weak transcription Brain Cingulate Gyrus brain
28 chr1:158975400-158978400 Enhancers Primary hematopoietic stem cells short term culture blood
29 chr1:158975400-158978600 Enhancers Primary hematopoietic stem cells blood
30 chr1:158975400-158979200 Weak transcription Liver Liver
31 chr1:158975400-158979200 Weak transcription Right Atrium heart
32 chr1:158975600-158978200 Weak transcription NHLF lung
33 chr1:158975600-158978400 Weak transcription Brain Anterior Caudate brain
34 chr1:158975800-158978200 Weak transcription Brain Substantia Nigra brain
35 chr1:158975800-158978200 Weak transcription Fetal Adrenal Gland Adrenal Gland
36 chr1:158975800-158978400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr1:158975800-158978400 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr1:158975800-158978400 Weak transcription NHEK skin
39 chr1:158975800-158978400 Weak transcription Osteobl bone
40 chr1:158975800-158978600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr1:158975800-158978600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr1:158975800-158978600 Weak transcription Muscle Satellite Cultured Cells --
43 chr1:158975800-158979200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
44 chr1:158976000-158977400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
45 chr1:158976000-158977400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
46 chr1:158976000-158978200 Enhancers Primary B cells from cord blood blood
47 chr1:158976000-158978200 Weak transcription Fetal Thymus thymus
48 chr1:158976000-158978200 Weak transcription NHDF-Ad bronchial
49 chr1:158976000-158978400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
50 chr1:158976000-158978600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015