Variant report

Variant	rs3755879
Chromosome Location	chr4:96114385-96114386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96110103..96113264-chr4:96113743..96117396,3	K562	blood:
2	chr4:96104964..96107220-chr4:96113230..96116059,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10026552	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12510488	0.85[ASN][1000 genomes]
rs13132800	0.90[ASN][1000 genomes]
rs1991946	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2289043	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3755880	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3775057	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3775059	0.82[ASN][1000 genomes]
rs3796459	0.83[ASN][1000 genomes]
rs3796460	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3796461	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3796462	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3796464	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs767824	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96098000-96127000	Weak transcription	Right Atrium	heart
2	chr4:96100000-96143000	Weak transcription	Fetal Kidney	kidney
3	chr4:96103600-96123000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:96104400-96115000	Weak transcription	Aorta	Aorta
5	chr4:96105800-96123200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr4:96110600-96114400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr4:96110600-96133800	Weak transcription	Gastric	stomach
8	chr4:96110600-96134000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:96111600-96116200	Enhancers	Brain Substantia Nigra	brain
10	chr4:96111600-96116800	Enhancers	Brain Hippocampus Middle	brain
11	chr4:96111800-96115800	Enhancers	Brain Anterior Caudate	brain
12	chr4:96111800-96116000	Enhancers	Brain Cingulate Gyrus	brain
13	chr4:96112600-96114400	Weak transcription	Brain Germinal Matrix	brain
14	chr4:96112600-96114400	Weak transcription	K562	blood
15	chr4:96112600-96125600	Weak transcription	Ovary	ovary
16	chr4:96112600-96127200	Weak transcription	Fetal Intestine Small	intestine
17	chr4:96112800-96114400	Weak transcription	Fetal Stomach	stomach
18	chr4:96112800-96122200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:96112800-96125400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr4:96113000-96114600	Weak transcription	Right Ventricle	heart
21	chr4:96113000-96115800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr4:96113200-96114800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr4:96113200-96114800	Weak transcription	Thymus	Thymus
24	chr4:96113600-96115800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr4:96113800-96114400	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr4:96113800-96114400	Genic enhancers	Brain Inferior Temporal Lobe	brain
27	chr4:96113800-96116400	Enhancers	Primary T cells from cord blood	blood
28	chr4:96113800-96116400	Enhancers	Fetal Thymus	thymus
29	chr4:96114000-96114400	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr4:96114000-96114400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr4:96114000-96116400	Weak transcription	Fetal Lung	lung
32	chr4:96114000-96116800	Enhancers	Fetal Heart	heart
33	chr4:96114200-96114400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:96114200-96115000	Enhancers	Primary T cells fromperipheralblood	blood
35	chr4:96114200-96115400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:96114200-96115400	Enhancers	Fetal Muscle Trunk	muscle
37	chr4:96114200-96115400	Enhancers	Fetal Muscle Leg	muscle
38	chr4:96114200-96115400	Enhancers	HSMM	muscle
39	chr4:96114200-96115800	Enhancers	Brain Angular Gyrus	brain
40	chr4:96114200-96117000	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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