Variant report

Variant	rs3796459
Chromosome Location	chr4:96116778-96116779
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96110103..96113264-chr4:96113743..96117396,3	K562	blood:
2	chr4:96103400..96106252-chr4:96114809..96117645,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10017546	0.80[ASN][1000 genomes]
rs1369086	0.93[CHB][hapmap]
rs1369087	0.90[CHB][hapmap]
rs1434537	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs1434547	0.85[CHB][hapmap]
rs1991947	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3755879	0.83[ASN][1000 genomes]
rs3755880	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs3775054	0.94[ASW][hapmap];0.82[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3775057	0.85[CHD][hapmap];0.85[ASN][1000 genomes]
rs3775058	1.00[ASW][hapmap];0.94[CEU][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3775059	0.94[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3796460	0.84[ASN][1000 genomes]
rs3796461	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs3857229	0.84[ASN][1000 genomes]
rs6815866	0.90[CHB][hapmap]
rs7681302	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96098000-96127000	Weak transcription	Right Atrium	heart
2	chr4:96100000-96143000	Weak transcription	Fetal Kidney	kidney
3	chr4:96103600-96123000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:96105800-96123200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr4:96110600-96133800	Weak transcription	Gastric	stomach
6	chr4:96110600-96134000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:96111600-96116800	Enhancers	Brain Hippocampus Middle	brain
8	chr4:96112600-96125600	Weak transcription	Ovary	ovary
9	chr4:96112600-96127200	Weak transcription	Fetal Intestine Small	intestine
10	chr4:96112800-96122200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:96112800-96125400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:96114000-96116800	Enhancers	Fetal Heart	heart
13	chr4:96114200-96117000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:96114400-96116800	Strong transcription	Fetal Stomach	stomach
15	chr4:96115200-96116800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr4:96115400-96134000	Weak transcription	Aorta	Aorta
17	chr4:96115800-96116800	Genic enhancers	Brain Angular Gyrus	brain
18	chr4:96115800-96122000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:96115800-96132800	Weak transcription	Right Ventricle	heart
20	chr4:96116000-96121400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr4:96116200-96117000	Strong transcription	Brain Anterior Caudate	brain
22	chr4:96116200-96123600	Weak transcription	Brain Substantia Nigra	brain
23	chr4:96116400-96116800	Genic enhancers	Brain Inferior Temporal Lobe	brain
24	chr4:96116400-96117000	Strong transcription	Fetal Lung	lung
25	chr4:96116400-96117200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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