Variant report

Variant	rs3756780
Chromosome Location	chr6:131893052-131893053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17060390	0.93[JPT][hapmap]
rs17060391	0.93[JPT][hapmap]
rs17060430	0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2297637	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73778009	0.86[EUR][1000 genomes]
rs73778022	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9398991	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv2829868	chr6:131729859-131898208	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886668	chr6:131814865-131954797	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131883400-131914000	Weak transcription	Pancreas	Pancrea
2	chr6:131883800-131896000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:131886800-131899400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:131887800-131910600	Weak transcription	Small Intestine	intestine
5	chr6:131888200-131903400	Weak transcription	Fetal Stomach	stomach
6	chr6:131888200-131908800	Weak transcription	Brain Angular Gyrus	brain
7	chr6:131888400-131895600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:131888400-131897800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:131888400-131902000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:131888400-131902200	Weak transcription	GM12878-XiMat	blood
11	chr6:131888600-131900000	Weak transcription	Left Ventricle	heart
12	chr6:131888600-131905800	Weak transcription	Aorta	Aorta
13	chr6:131888800-131894000	Weak transcription	Primary B cells from cord blood	blood
14	chr6:131889000-131894400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:131889600-131897000	Weak transcription	Fetal Intestine Large	intestine
16	chr6:131889600-131898000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr6:131889600-131898400	Weak transcription	Fetal Lung	lung
18	chr6:131889600-131900000	Weak transcription	Ovary	ovary
19	chr6:131889600-131902200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:131889600-131923200	Weak transcription	Esophagus	oesophagus
21	chr6:131890200-131894200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:131890200-131900200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr6:131890200-131902200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:131890400-131894400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr6:131890400-131901200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:131890600-131894000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr6:131890600-131895600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:131890600-131909600	Weak transcription	Psoas Muscle	Psoas
29	chr6:131890800-131900400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr6:131890800-131908000	Weak transcription	Colon Smooth Muscle	Colon
31	chr6:131890800-131910600	Weak transcription	Brain Substantia Nigra	brain
32	chr6:131891200-131896400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:131891200-131897000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:131891600-131895400	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr6:131891600-131896400	Weak transcription	Adipose Nuclei	Adipose
36	chr6:131891800-131893400	Weak transcription	Fetal Muscle Leg	muscle
37	chr6:131892000-131893800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:131892000-131894000	Weak transcription	HepG2	liver
39	chr6:131892000-131900000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:131892200-131893800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:131892200-131893800	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr6:131892200-131895000	Weak transcription	Primary T cells from cord blood	blood
43	chr6:131892200-131899200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:131892200-131899400	Weak transcription	Placenta	Placenta
45	chr6:131892200-131901600	Weak transcription	NH-A	brain
46	chr6:131892200-131902200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr6:131892400-131897800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr6:131892400-131900000	Weak transcription	HSMMtube	muscle
49	chr6:131892400-131905800	Weak transcription	Fetal Intestine Small	intestine
50	chr6:131892400-131941400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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