Variant report

Variant	rs2297637
Chromosome Location	chr6:131900519-131900520
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17060390	0.81[JPT][hapmap]
rs17060391	0.81[JPT][hapmap]
rs17060430	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2295446	0.91[LWK][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs3756780	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56235482	0.80[AFR][1000 genomes]
rs57849806	0.82[EUR][1000 genomes]
rs6923189	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs73778009	0.82[EUR][1000 genomes]
rs73778022	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73779836	0.80[AFR][1000 genomes]
rs9398991	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv886668	chr6:131814865-131954797	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131883400-131914000	Weak transcription	Pancreas	Pancrea
2	chr6:131887800-131910600	Weak transcription	Small Intestine	intestine
3	chr6:131888200-131903400	Weak transcription	Fetal Stomach	stomach
4	chr6:131888200-131908800	Weak transcription	Brain Angular Gyrus	brain
5	chr6:131888400-131902000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:131888400-131902200	Weak transcription	GM12878-XiMat	blood
7	chr6:131888600-131905800	Weak transcription	Aorta	Aorta
8	chr6:131889600-131902200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:131889600-131923200	Weak transcription	Esophagus	oesophagus
10	chr6:131890200-131902200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:131890400-131901200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:131890600-131909600	Weak transcription	Psoas Muscle	Psoas
13	chr6:131890800-131908000	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:131890800-131910600	Weak transcription	Brain Substantia Nigra	brain
15	chr6:131892200-131901600	Weak transcription	NH-A	brain
16	chr6:131892200-131902200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:131892400-131905800	Weak transcription	Fetal Intestine Small	intestine
18	chr6:131892400-131941400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:131892800-131900800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr6:131892800-131902400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:131892800-131905800	Weak transcription	Lung	lung
22	chr6:131893000-131902200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr6:131893000-131903400	Weak transcription	Fetal Brain Male	brain
24	chr6:131894000-131948000	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr6:131894400-131903000	Weak transcription	NHLF	lung
26	chr6:131894400-131903800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr6:131894600-131903600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr6:131895000-131906600	Strong transcription	Primary T cells from cord blood	blood
29	chr6:131895400-131901200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:131895400-131909600	Weak transcription	Stomach Mucosa	stomach
31	chr6:131895600-131903400	Weak transcription	K562	blood
32	chr6:131895600-131905000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:131895600-131905000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:131895600-131905800	Weak transcription	Gastric	stomach
35	chr6:131895600-131946600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:131895800-131908400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:131896000-131903600	Weak transcription	Fetal Kidney	kidney
38	chr6:131896000-131910800	Weak transcription	Colonic Mucosa	Colon
39	chr6:131896400-131901000	Weak transcription	Brain Hippocampus Middle	brain
40	chr6:131896400-131901200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr6:131896400-131915200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:131896400-131946800	Strong transcription	Adipose Nuclei	Adipose
43	chr6:131896600-131946200	Strong transcription	Primary B cells from peripheral blood	blood
44	chr6:131896600-131946800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:131897000-131947800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:131897200-131903200	Weak transcription	Brain Germinal Matrix	brain
47	chr6:131897200-131919600	Weak transcription	Spleen	Spleen
48	chr6:131897200-131947200	Strong transcription	Fetal Thymus	thymus
49	chr6:131897200-131948000	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr6:131897400-131923200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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