Variant report

Variant	rs2295446
Chromosome Location	chr6:131945731-131945732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:131943994..131947499-chr6:131947613..131949503,5	K562	blood:
2	chr6:131943835..131946646-chr6:131947889..131950077,3	MCF-7	breast:
3	chr6:131909417..131912475-chr6:131944322..131947356,3	K562	blood:

Variant related genes	Relation type
ENSG00000154269	Chromatin interaction
ENSG00000112282	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11965499	1.00[ASN][1000 genomes]
rs12664729	1.00[CHB][hapmap]
rs17060457	1.00[ASN][1000 genomes]
rs2297637	0.91[LWK][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs56235482	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6923189	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73779832	1.00[ASN][1000 genomes]
rs73779836	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73779846	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7740743	1.00[ASN][1000 genomes]
rs7747145	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv886668	chr6:131814865-131954797	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131894000-131948000	Strong transcription	Primary T cells fromperipheralblood	blood
2	chr6:131895600-131946600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:131896400-131946800	Strong transcription	Adipose Nuclei	Adipose
4	chr6:131896600-131946200	Strong transcription	Primary B cells from peripheral blood	blood
5	chr6:131896600-131946800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:131897000-131947800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:131897200-131947200	Strong transcription	Fetal Thymus	thymus
8	chr6:131897200-131948000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr6:131898200-131948600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:131898200-131948600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:131898400-131947400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr6:131899000-131946800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:131899000-131946800	Strong transcription	Duodenum Mucosa	Duodenum
14	chr6:131899000-131946800	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr6:131899000-131948000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:131899200-131945800	Strong transcription	HepG2	liver
17	chr6:131899200-131946400	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:131899400-131946800	Strong transcription	Placenta	Placenta
19	chr6:131899400-131947400	Strong transcription	Dnd41	blood
20	chr6:131899400-131947800	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:131899600-131946800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:131899600-131947800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:131900000-131946800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:131900000-131947000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:131900200-131946600	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr6:131900400-131946200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr6:131900800-131947000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr6:131901600-131946800	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:131901600-131947200	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr6:131902000-131946200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr6:131902200-131946800	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:131903800-131946600	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr6:131908000-131946800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:131910000-131948600	Weak transcription	Stomach Mucosa	stomach
35	chr6:131916200-131946800	Strong transcription	Liver	Liver
36	chr6:131916800-131947800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:131919600-131946600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:131924400-131946200	Strong transcription	NH-A	brain
39	chr6:131924600-131946800	Strong transcription	Primary B cells from cord blood	blood
40	chr6:131924600-131946800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:131924800-131946200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:131924800-131947800	Strong transcription	Osteobl	bone
43	chr6:131925200-131948800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:131927200-131946800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:131929000-131946800	Strong transcription	Fetal Intestine Large	intestine
46	chr6:131929600-131946600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
47	chr6:131929800-131946800	Strong transcription	Primary T cells from cord blood	blood
48	chr6:131930000-131946600	Strong transcription	HSMM	muscle
49	chr6:131933800-131946200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr6:131934000-131946800	Strong transcription	HUES6 Cell Line	embryonic stem cell

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