Variant report

Variant	rs7740743
Chromosome Location	chr6:131948150-131948151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SREBP2	chr6:131947542-131950211	GM12878	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:131915943..131917882-chr6:131947988..131950710,2	K562	blood:
2	chr6:131945868..131955351-chr6:131956247..131968981,28	K562	blood:
3	chr6:131947988..131951073-chr6:131970793..131974788,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR2A4-1	chr6:131948101-131948623	NONHSAT114921

No data

Variant related genes	Relation type
ENPP3	TF binding region
ENSG00000154269	Chromatin interaction
ENSG00000112282	Chromatin interaction
ENSG00000252560	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11965499	1.00[ASN][1000 genomes]
rs17060457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2295446	1.00[ASN][1000 genomes]
rs56235482	1.00[ASN][1000 genomes]
rs6923189	1.00[ASN][1000 genomes]
rs73779832	1.00[ASN][1000 genomes]
rs73779836	1.00[ASN][1000 genomes]
rs73779846	1.00[ASN][1000 genomes]
rs7747145	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv886668	chr6:131814865-131954797	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131898200-131948600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:131898200-131948600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:131910000-131948600	Weak transcription	Stomach Mucosa	stomach
4	chr6:131925200-131948800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:131936600-131948800	Weak transcription	Pancreas	Pancrea
6	chr6:131940600-131948400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:131941200-131948200	Weak transcription	Fetal Heart	heart
8	chr6:131941400-131948600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:131942400-131948200	Weak transcription	Fetal Intestine Small	intestine
10	chr6:131942400-131948400	Weak transcription	Right Ventricle	heart
11	chr6:131942400-131949000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:131943400-131948400	Weak transcription	Hela-S3	cervix
13	chr6:131944400-131948400	Weak transcription	Psoas Muscle	Psoas
14	chr6:131945400-131948200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:131945600-131948400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:131945600-131948400	Weak transcription	Colonic Mucosa	Colon
17	chr6:131945600-131948400	Weak transcription	Fetal Stomach	stomach
18	chr6:131945600-131948600	Weak transcription	Aorta	Aorta
19	chr6:131945600-131948800	Weak transcription	Small Intestine	intestine
20	chr6:131945800-131948200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:131945800-131948200	Weak transcription	Brain Angular Gyrus	brain
22	chr6:131945800-131948400	Weak transcription	Fetal Muscle Leg	muscle
23	chr6:131945800-131948400	Weak transcription	Thymus	Thymus
24	chr6:131945800-131948600	Weak transcription	Ovary	ovary
25	chr6:131945800-131948800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:131945800-131948800	Weak transcription	Esophagus	oesophagus
27	chr6:131945800-131948800	Weak transcription	Gastric	stomach
28	chr6:131945800-131948800	Weak transcription	Spleen	Spleen
29	chr6:131946000-131948600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:131946200-131948400	Weak transcription	Primary B cells from peripheral blood	blood
31	chr6:131946200-131948400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:131946200-131948400	Weak transcription	Colon Smooth Muscle	Colon
33	chr6:131946200-131948400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:131946200-131948400	Weak transcription	A549	lung
35	chr6:131946200-131948400	Weak transcription	HSMMtube	muscle
36	chr6:131946200-131948600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr6:131946200-131948800	Weak transcription	Left Ventricle	heart
38	chr6:131946200-131948800	Weak transcription	Lung	lung
39	chr6:131946200-131948800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:131946400-131948200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
41	chr6:131946600-131948200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr6:131946600-131948400	Weak transcription	Fetal Brain Male	brain
43	chr6:131946600-131948400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr6:131946800-131948200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr6:131946800-131948200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:131946800-131948400	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr6:131946800-131948600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr6:131946800-131948600	Weak transcription	Placenta	Placenta
49	chr6:131946800-131948600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr6:131947000-131948200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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