Variant report

Variant	rs73779832
Chromosome Location	chr6:131938538-131938539
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131934302..131936663-chr6:131938077..131940339,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11965499	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17060457	1.00[ASN][1000 genomes]
rs2295446	1.00[ASN][1000 genomes]
rs56091275	1.00[AMR][1000 genomes]
rs56235482	1.00[ASN][1000 genomes]
rs6923189	1.00[ASN][1000 genomes]
rs73779836	1.00[ASN][1000 genomes]
rs73779846	1.00[ASN][1000 genomes]
rs7740743	1.00[ASN][1000 genomes]
rs7747145	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv886668	chr6:131814865-131954797	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131892400-131941400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:131894000-131948000	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr6:131895600-131946600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:131896400-131946800	Strong transcription	Adipose Nuclei	Adipose
5	chr6:131896600-131946200	Strong transcription	Primary B cells from peripheral blood	blood
6	chr6:131896600-131946800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:131897000-131947800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:131897200-131947200	Strong transcription	Fetal Thymus	thymus
9	chr6:131897200-131948000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr6:131898200-131948600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:131898200-131948600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:131898400-131940000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:131898400-131947400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr6:131899000-131946800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:131899000-131946800	Strong transcription	Duodenum Mucosa	Duodenum
16	chr6:131899000-131946800	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr6:131899000-131948000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:131899200-131945800	Strong transcription	HepG2	liver
19	chr6:131899200-131946400	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr6:131899400-131946800	Strong transcription	Placenta	Placenta
21	chr6:131899400-131947400	Strong transcription	Dnd41	blood
22	chr6:131899400-131947800	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:131899600-131946800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:131899600-131947800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:131900000-131946800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:131900000-131947000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:131900200-131946600	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr6:131900400-131946200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr6:131900800-131947000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr6:131901600-131946800	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr6:131901600-131947200	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:131902000-131946200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:131902200-131946800	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr6:131903800-131946600	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr6:131906400-131938800	Weak transcription	Hela-S3	cervix
36	chr6:131908000-131946800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:131910000-131948600	Weak transcription	Stomach Mucosa	stomach
38	chr6:131914400-131940600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr6:131916200-131946800	Strong transcription	Liver	Liver
40	chr6:131916600-131944000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:131916800-131947800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:131919600-131946600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr6:131920400-131940000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr6:131923600-131939800	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr6:131924400-131946200	Strong transcription	NH-A	brain
46	chr6:131924600-131946800	Strong transcription	Primary B cells from cord blood	blood
47	chr6:131924600-131946800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:131924800-131946200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:131924800-131947800	Strong transcription	Osteobl	bone
50	chr6:131925200-131948800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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