Variant report

Variant	rs11965499
Chromosome Location	chr6:131968652-131968653
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17060457	1.00[ASN][1000 genomes]
rs2295446	1.00[ASN][1000 genomes]
rs56235482	1.00[ASN][1000 genomes]
rs6923189	1.00[ASN][1000 genomes]
rs73778008	1.00[AMR][1000 genomes]
rs73779832	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73779836	1.00[ASN][1000 genomes]
rs73779846	1.00[ASN][1000 genomes]
rs7740743	1.00[ASN][1000 genomes]
rs7747145	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131949800-131983200	Weak transcription	Aorta	Aorta
2	chr6:131952600-131973800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:131959400-131970400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:131960000-131971400	Weak transcription	Fetal Intestine Small	intestine
5	chr6:131963000-131973800	Weak transcription	Small Intestine	intestine
6	chr6:131964200-131971000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:131964400-131973200	Weak transcription	Colonic Mucosa	Colon
8	chr6:131964800-131975200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:131966800-131970400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:131967800-131969800	Active TSS	K562	blood
11	chr6:131967800-131970400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:131967800-131972200	Weak transcription	Fetal Intestine Large	intestine
13	chr6:131967800-131977600	Strong transcription	HepG2	liver
14	chr6:131968000-131972200	Weak transcription	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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