Variant report

Variant	rs3757673
Chromosome Location	chr7:26190616-26190617
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:26190480-26190630	Caco-2	colon:	n/a	n/a
2	POLR2A	chr7:26188975-26207164	K562	blood:	n/a	n/a
3	CEBPB	chr7:26190437-26190745	K562	blood:	n/a	chr7:26190593-26190606

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:26174239..26175923-chr7:26189473..26191347,2	K562	blood:
2	chr7:26187891..26202612-chr7:26221953..26234536,42	K562	blood:
3	chr7:26188352..26191164-chr7:26239205..26240759,2	MCF-7	breast:
4	chr7:26190306..26191845-chr7:26238643..26241387,3	K562	blood:
5	chr7:26187762..26202698-chr7:26218693..26233402,42	K562	blood:
6	chr7:26190297..26193509-chr7:26229457..26232588,3	MCF-7	breast:
7	chr7:26188281..26195881-chr7:26237249..26245873,15	K562	blood:
8	chr7:26189582..26191145-chr7:26243499..26245167,2	K562	blood:
9	chr7:26190149..26194223-chr7:26238891..26242307,10	MCF-7	breast:

No data

Variant related genes	Relation type
NFE2L3	TF binding region
ENSG00000050344	Chromatin interaction
ENSG00000122566	Chromatin interaction
ENSG00000122565	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10499571	1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes]
rs11976883	0.91[CHB][hapmap]
rs12669830	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs17153328	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17153368	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs17153396	0.82[CHB][hapmap]
rs7794892	1.00[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
2	nsv1019804	chr7:26057723-26214280	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv887849	chr7:26075094-26234302	Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1028727	chr7:26111703-26193309	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
6	nsv1034358	chr7:26142380-26219559	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26183800-26191000	Weak transcription	Adipose Nuclei	Adipose
2	chr7:26184600-26191200	Weak transcription	A549	lung
3	chr7:26184800-26191000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:26187200-26191200	Weak transcription	Gastric	stomach
5	chr7:26187200-26191400	Weak transcription	Lung	lung
6	chr7:26188800-26191000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:26189400-26191400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:26190000-26191200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:26190000-26191800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:26190200-26191200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr7:26190400-26191200	Enhancers	Primary T cells fromperipheralblood	blood
12	chr7:26190400-26191200	Enhancers	K562	blood
13	chr7:26190600-26190800	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr7:26190600-26190800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:26190600-26190800	Enhancers	GM12878-XiMat	blood
16	chr7:26190600-26191000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr7:26190600-26191000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr7:26190600-26191000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr7:26190600-26191200	Enhancers	Primary T cells from cord blood	blood
20	chr7:26190600-26191200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr7:26190600-26191200	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr7:26190600-26191200	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr7:26190600-26191200	Bivalent Enhancer	Brain Cingulate Gyrus	brain
24	chr7:26190600-26191200	Enhancers	Fetal Thymus	thymus
25	chr7:26190600-26191200	Bivalent Enhancer	HepG2	liver
26	chr7:26190600-26191400	Enhancers	Brain Substantia Nigra	brain
27	chr7:26190600-26191400	Enhancers	Spleen	Spleen

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