Variant report

Variant	rs11976883
Chromosome Location	chr7:26278884-26278885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26272249..26274345-chr7:26278548..26281034,2	MCF-7	breast:
2	chr7:26191194..26193333-chr7:26277861..26280207,2	K562	blood:
3	chr7:26273432..26276921-chr7:26278671..26281844,3	K562	blood:
4	chr7:26239072..26242746-chr7:26278698..26281751,4	MCF-7	breast:
5	chr7:26272335..26275013-chr7:26275763..26278942,5	K562	blood:

Variant related genes	Relation type
ENSG00000122565	Chromatin interaction
ENSG00000050344	Chromatin interaction
ENSG00000122566	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10499571	1.00[CHB][hapmap]
rs11971108	1.00[EUR][1000 genomes]
rs11971308	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11971320	0.84[EUR][1000 genomes]
rs11972057	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11975011	0.84[EUR][1000 genomes]
rs11977822	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12531642	1.00[CEU][hapmap]
rs12535874	0.82[CEU][hapmap]
rs12669191	0.97[ASN][1000 genomes]
rs12669830	1.00[CHB][hapmap]
rs17153176	1.00[CEU][hapmap]
rs17153183	1.00[CEU][hapmap]
rs17153193	1.00[CEU][hapmap]
rs17153217	0.82[CEU][hapmap]
rs17153328	1.00[CHB][hapmap]
rs17153368	1.00[CHB][hapmap]
rs17153396	0.91[CHB][hapmap]
rs17322608	1.00[CEU][hapmap]
rs3757673	0.91[CHB][hapmap]
rs41275982	0.84[EUR][1000 genomes]
rs55754901	0.84[EUR][1000 genomes]
rs55813103	0.81[EUR][1000 genomes]
rs56021640	0.84[EUR][1000 genomes]
rs56132015	0.81[EUR][1000 genomes]
rs56276467	0.84[EUR][1000 genomes]
rs56393994	0.84[EUR][1000 genomes]
rs59142558	0.84[EUR][1000 genomes]
rs59685141	0.84[EUR][1000 genomes]
rs60954252	0.94[EUR][1000 genomes]
rs61009175	0.84[EUR][1000 genomes]
rs6945071	0.82[CEU][hapmap]
rs73281517	0.81[EUR][1000 genomes]
rs73281521	0.84[EUR][1000 genomes]
rs73281523	0.84[EUR][1000 genomes]
rs73281527	0.84[EUR][1000 genomes]
rs73281529	0.84[EUR][1000 genomes]
rs73281530	0.84[EUR][1000 genomes]
rs73281532	0.84[EUR][1000 genomes]
rs73281538	0.84[EUR][1000 genomes]
rs73281546	0.84[EUR][1000 genomes]
rs73281548	0.84[EUR][1000 genomes]
rs73281550	0.84[EUR][1000 genomes]
rs73281551	0.84[EUR][1000 genomes]
rs73281554	0.84[EUR][1000 genomes]
rs73281562	0.84[EUR][1000 genomes]
rs73281563	0.84[EUR][1000 genomes]
rs73281570	0.84[EUR][1000 genomes]
rs73281578	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73281586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73281591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7793815	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7793849	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7794892	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs7798249	0.94[EUR][1000 genomes]
rs7807030	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	esv1821097	chr7:26243108-26303403	Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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