Variant report

Variant	rs60954252
Chromosome Location	chr7:26275863-26275864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26275717..26278745-chr7:26280053..26281997,3	MCF-7	breast:
2	chr7:26240166..26242949-chr7:26275134..26276950,2	MCF-7	breast:
3	chr7:26272149..26273897-chr7:26275244..26277263,2	K562	blood:
4	chr7:26273432..26276921-chr7:26278671..26281844,3	K562	blood:
5	chr7:26272335..26275013-chr7:26275763..26278942,5	K562	blood:

Variant related genes	Relation type
ENSG00000122565	Chromatin interaction
ENSG00000122566	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11971108	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971308	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971320	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971402	1.00[ASN][1000 genomes]
rs11972057	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11974685	1.00[ASN][1000 genomes]
rs11975011	0.89[EUR][1000 genomes]
rs11976883	0.94[EUR][1000 genomes]
rs11977822	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28409739	1.00[ASN][1000 genomes]
rs41275982	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55754901	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55813103	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56021640	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56132015	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56273868	1.00[ASN][1000 genomes]
rs56276467	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56287413	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56376224	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56393994	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56413126	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59142558	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59371106	1.00[ASN][1000 genomes]
rs59685141	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59820708	1.00[ASN][1000 genomes]
rs61009175	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6948113	1.00[ASN][1000 genomes]
rs73279689	1.00[ASN][1000 genomes]
rs73279692	1.00[ASN][1000 genomes]
rs73281517	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281521	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281523	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281527	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281529	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281530	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281532	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281538	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281546	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281548	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281550	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281551	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281554	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281562	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281563	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281570	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281578	1.00[EUR][1000 genomes]
rs73281586	1.00[EUR][1000 genomes]
rs73281591	1.00[EUR][1000 genomes]
rs7793815	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7793849	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794205	1.00[ASN][1000 genomes]
rs7798249	1.00[EUR][1000 genomes]
rs7803860	1.00[ASN][1000 genomes]
rs7807030	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	esv1821097	chr7:26243108-26303403	Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26274200-26277400	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr7:26274200-26277600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr7:26274400-26276600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:26275600-26276800	Weak transcription	K562	blood

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