Variant report

Variant	rs11974685
Chromosome Location	chr7:26288856-26288857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26238447..26242417-chr7:26288690..26292184,7	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CBX3-2	chr7:26288822-26289030	NONHSAT119626

Variant related genes	Relation type
ENSG00000122566	Chromatin interaction
ENSG00000122565	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11971108	1.00[ASN][1000 genomes]
rs11971308	1.00[ASN][1000 genomes]
rs11971320	1.00[ASN][1000 genomes]
rs11971402	1.00[ASN][1000 genomes]
rs11972057	1.00[ASN][1000 genomes]
rs11973551	0.90[EUR][1000 genomes]
rs11977822	1.00[ASN][1000 genomes]
rs28409739	1.00[ASN][1000 genomes]
rs34529894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41275982	1.00[ASN][1000 genomes]
rs55754901	1.00[ASN][1000 genomes]
rs55813103	1.00[ASN][1000 genomes]
rs56021640	1.00[ASN][1000 genomes]
rs56132015	1.00[ASN][1000 genomes]
rs56273868	1.00[ASN][1000 genomes]
rs56276467	1.00[ASN][1000 genomes]
rs56287413	1.00[ASN][1000 genomes]
rs56376224	1.00[ASN][1000 genomes]
rs56393994	1.00[ASN][1000 genomes]
rs56413126	1.00[ASN][1000 genomes]
rs59142558	1.00[ASN][1000 genomes]
rs59371106	1.00[ASN][1000 genomes]
rs59685141	1.00[ASN][1000 genomes]
rs59820708	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60954252	1.00[ASN][1000 genomes]
rs61009175	1.00[ASN][1000 genomes]
rs6948113	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73279689	1.00[ASN][1000 genomes]
rs73279692	1.00[ASN][1000 genomes]
rs73281517	1.00[ASN][1000 genomes]
rs73281521	1.00[ASN][1000 genomes]
rs73281523	1.00[ASN][1000 genomes]
rs73281527	1.00[ASN][1000 genomes]
rs73281529	1.00[ASN][1000 genomes]
rs73281530	1.00[ASN][1000 genomes]
rs73281532	1.00[ASN][1000 genomes]
rs73281538	1.00[ASN][1000 genomes]
rs73281546	1.00[ASN][1000 genomes]
rs73281548	1.00[ASN][1000 genomes]
rs73281550	1.00[ASN][1000 genomes]
rs73281551	1.00[ASN][1000 genomes]
rs73281554	1.00[ASN][1000 genomes]
rs73281562	1.00[ASN][1000 genomes]
rs73281563	1.00[ASN][1000 genomes]
rs73281570	1.00[ASN][1000 genomes]
rs73283329	0.90[EUR][1000 genomes]
rs7793815	1.00[ASN][1000 genomes]
rs7793849	1.00[ASN][1000 genomes]
rs7794205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7803860	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7807030	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	esv1821097	chr7:26243108-26303403	Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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