Variant report

Variant	rs59371106
Chromosome Location	chr7:26188471-26188472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr7:26188447-26188599	K562	blood:	n/a	n/a
2	TAL1	chr7:26188362-26188562	K562	blood:	n/a	n/a
3	NR2F2	chr7:26188031-26188864	K562	blood:	n/a	n/a
4	NR2F2	chr7:26188194-26188634	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:26187891..26202612-chr7:26221953..26234536,42	K562	blood:
2	chr7:26186252..26188116-chr7:26188165..26190170,2	K562	blood:
3	chr7:26188352..26191164-chr7:26239205..26240759,2	MCF-7	breast:
4	chr7:26185994..26190276-chr7:26237355..26239722,4	K562	blood:
5	chr7:26187762..26202698-chr7:26218693..26233402,42	K562	blood:
6	chr7:26188281..26195881-chr7:26237249..26245873,15	K562	blood:

No data

Variant related genes	Relation type
NFE2L3	TF binding region
ENSG00000122566	Chromatin interaction
ENSG00000122565	Chromatin interaction
ENSG00000050344	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11971108	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11971308	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11971320	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11971402	1.00[ASN][1000 genomes]
rs11972057	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11974685	1.00[ASN][1000 genomes]
rs11975011	0.83[AMR][1000 genomes]
rs11977822	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11980825	1.00[ASN][1000 genomes]
rs17321514	1.00[ASN][1000 genomes]
rs28409739	1.00[ASN][1000 genomes]
rs41275982	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55754901	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55813103	1.00[ASN][1000 genomes]
rs56021640	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56132015	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56273868	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56276467	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56287413	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56376224	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56393994	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56413126	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57188228	1.00[ASN][1000 genomes]
rs57665417	1.00[ASN][1000 genomes]
rs59142558	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59344953	1.00[ASN][1000 genomes]
rs59685141	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59820708	1.00[ASN][1000 genomes]
rs60411547	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60954252	1.00[ASN][1000 genomes]
rs61009175	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61405107	1.00[ASN][1000 genomes]
rs6948113	1.00[ASN][1000 genomes]
rs73279689	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73279692	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281517	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73281521	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73281523	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73281527	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73281529	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73281530	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73281532	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73281538	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73281546	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73281548	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73281550	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73281551	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73281554	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73281562	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73281563	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73281570	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7793815	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7793849	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7794205	1.00[ASN][1000 genomes]
rs7798249	0.91[AMR][1000 genomes]
rs7803860	1.00[ASN][1000 genomes]
rs7807030	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
2	nsv1019804	chr7:26057723-26214280	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv887849	chr7:26075094-26234302	Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1028727	chr7:26111703-26193309	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
6	nsv606435	chr7:26127564-26190193	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1034358	chr7:26142380-26219559	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26183800-26191000	Weak transcription	Adipose Nuclei	Adipose
2	chr7:26184600-26191200	Weak transcription	A549	lung
3	chr7:26184800-26188800	Weak transcription	K562	blood
4	chr7:26184800-26191000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:26187200-26191200	Weak transcription	Gastric	stomach
6	chr7:26187200-26191400	Weak transcription	Lung	lung

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