Variant report

Variant	rs17321514
Chromosome Location	chr7:26050920-26050921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26049479..26051389-chr7:26053881..26055684,2	K562	blood:
2	chr7:26034062..26036742-chr7:26049058..26051711,2	K562	blood:
3	chr7:26048553..26051389-chr7:26053656..26055381,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11971308	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs11971320	1.00[ASN][1000 genomes]
rs11971402	1.00[ASN][1000 genomes]
rs11972057	1.00[ASN][1000 genomes]
rs11977822	1.00[ASN][1000 genomes]
rs11980825	1.00[ASN][1000 genomes]
rs17322566	1.00[CEU][hapmap]
rs28409739	1.00[ASN][1000 genomes]
rs41275982	1.00[ASN][1000 genomes]
rs55754901	1.00[ASN][1000 genomes]
rs55813103	1.00[ASN][1000 genomes]
rs56021640	1.00[ASN][1000 genomes]
rs56132015	1.00[ASN][1000 genomes]
rs56273868	1.00[ASN][1000 genomes]
rs56276467	1.00[ASN][1000 genomes]
rs56287413	1.00[ASN][1000 genomes]
rs56376224	1.00[ASN][1000 genomes]
rs56393994	1.00[ASN][1000 genomes]
rs56413126	1.00[ASN][1000 genomes]
rs57188228	1.00[ASN][1000 genomes]
rs57665417	1.00[ASN][1000 genomes]
rs59142558	1.00[ASN][1000 genomes]
rs59344953	1.00[ASN][1000 genomes]
rs59371106	1.00[ASN][1000 genomes]
rs59685141	1.00[ASN][1000 genomes]
rs61009175	1.00[ASN][1000 genomes]
rs61405107	1.00[ASN][1000 genomes]
rs6945001	0.87[CEU][hapmap]
rs73279689	1.00[ASN][1000 genomes]
rs73279692	1.00[ASN][1000 genomes]
rs73281517	1.00[ASN][1000 genomes]
rs73281521	1.00[ASN][1000 genomes]
rs73281523	1.00[ASN][1000 genomes]
rs73281527	1.00[ASN][1000 genomes]
rs73281529	1.00[ASN][1000 genomes]
rs73281530	1.00[ASN][1000 genomes]
rs73281532	1.00[ASN][1000 genomes]
rs73281538	1.00[ASN][1000 genomes]
rs73281546	1.00[ASN][1000 genomes]
rs73281548	1.00[ASN][1000 genomes]
rs73281550	1.00[ASN][1000 genomes]
rs73281551	1.00[ASN][1000 genomes]
rs73281554	1.00[ASN][1000 genomes]
rs73281562	1.00[ASN][1000 genomes]
rs73281563	1.00[ASN][1000 genomes]
rs73281570	1.00[ASN][1000 genomes]
rs7793815	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs7793849	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs7807030	1.00[GIH][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
4	nsv887848	chr7:26000137-26059739	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv606433	chr7:26007582-26050920	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv470188	chr7:26013958-26075094	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv464412	chr7:26013959-26073411	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv606434	chr7:26013959-26073411	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26047600-26052000	Weak transcription	Gastric	stomach
2	chr7:26048600-26052000	Weak transcription	Pancreas	Pancrea
3	chr7:26048800-26051800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr7:26050600-26051000	Bivalent Enhancer	Primary B cells from cord blood	blood
5	chr7:26050600-26051400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
6	chr7:26050600-26051400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr7:26050600-26051400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:26050600-26051400	Flanking Active TSS	GM12878-XiMat	blood
9	chr7:26050600-26051800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
10	chr7:26050800-26051000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:26050800-26051200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr7:26050800-26051400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links