Variant report

Variant	rs11980825
Chromosome Location	chr7:26010003-26010004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11971320	1.00[ASN][1000 genomes]
rs11971402	1.00[ASN][1000 genomes]
rs11977822	1.00[ASN][1000 genomes]
rs17321514	1.00[ASN][1000 genomes]
rs28409739	1.00[ASN][1000 genomes]
rs55704418	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55754901	1.00[ASN][1000 genomes]
rs55813103	1.00[ASN][1000 genomes]
rs56132015	1.00[ASN][1000 genomes]
rs56273868	1.00[ASN][1000 genomes]
rs56276467	1.00[ASN][1000 genomes]
rs56287413	1.00[ASN][1000 genomes]
rs56376224	1.00[ASN][1000 genomes]
rs56393994	1.00[ASN][1000 genomes]
rs56413126	1.00[ASN][1000 genomes]
rs56681948	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57188228	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57665417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59344953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59371106	1.00[ASN][1000 genomes]
rs61405107	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73279689	1.00[ASN][1000 genomes]
rs73279692	1.00[ASN][1000 genomes]
rs73281517	1.00[ASN][1000 genomes]
rs73281521	1.00[ASN][1000 genomes]
rs73281523	1.00[ASN][1000 genomes]
rs73281527	1.00[ASN][1000 genomes]
rs73281529	1.00[ASN][1000 genomes]
rs73281530	1.00[ASN][1000 genomes]
rs73281532	1.00[ASN][1000 genomes]
rs73281538	1.00[ASN][1000 genomes]
rs7792195	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7807030	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
4	nsv887848	chr7:26000137-26059739	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv606433	chr7:26007582-26050920	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26009000-26010200	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:26009400-26010800	Weak transcription	GM12878-XiMat	blood
3	chr7:26010000-26010400	Enhancers	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links