Variant report

Variant	rs11973551
Chromosome Location	chr7:26319154-26319155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26313227..26315137-chr7:26318290..26321269,2	K562	blood:
2	chr7:26239322..26242425-chr7:26317596..26320562,4	K562	blood:
3	chr7:26218241..26220346-chr7:26316988..26319565,2	K562	blood:
4	chr7:26237366..26241519-chr7:26315819..26319990,7	K562	blood:
5	chr7:26225358..26228144-chr7:26318718..26321292,4	K562	blood:
6	chr7:26236967..26245040-chr7:26316050..26322188,15	MCF-7	breast:
7	chr7:26225358..26228940-chr7:26318718..26321554,4	K562	blood:
8	chr7:26318088..26320982-chr7:26326955..26329632,2	MCF-7	breast:
9	chr7:26318107..26320875-chr7:26702429..26705319,2	MCF-7	breast:
10	chr7:26318218..26320268-chr7:26403351..26405255,2	MCF-7	breast:
11	chr7:26234755..26243649-chr7:26316786..26321454,13	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11974685	0.90[EUR][1000 genomes]
rs28708490	1.00[ASN][1000 genomes]
rs34529894	0.90[EUR][1000 genomes]
rs59820708	1.00[EUR][1000 genomes]
rs6948113	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73283333	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73283335	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794205	0.90[EUR][1000 genomes]
rs7803860	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1018352	chr7:26298095-26341825	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26317400-26319400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr7:26317400-26319600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:26318200-26319200	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr7:26318200-26319600	Enhancers	GM12878-XiMat	blood
5	chr7:26318200-26321800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:26318400-26319400	Enhancers	Placenta	Placenta
7	chr7:26318400-26319600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:26318600-26319400	Enhancers	Primary B cells from peripheral blood	blood
9	chr7:26318600-26319600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr7:26318600-26319800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr7:26318800-26319400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:26318800-26319600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:26319000-26319200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:26319000-26319400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
15	chr7:26319000-26319600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr7:26319000-26319800	Flanking Active TSS	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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