Variant report

Variant	rs3758504
Chromosome Location	chr10:94336414-94336415
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11187061	0.88[AFR][1000 genomes]
rs11187074	0.92[AFR][1000 genomes]
rs12244660	0.83[EUR][1000 genomes]
rs12244738	0.83[EUR][1000 genomes]
rs12244809	0.83[EUR][1000 genomes]
rs12779070	0.83[EUR][1000 genomes]
rs2488057	0.83[EUR][1000 genomes]
rs4406744	0.88[AFR][1000 genomes]
rs58177786	0.83[EUR][1000 genomes]
rs6583821	0.82[AFR][1000 genomes]
rs7068540	0.83[EUR][1000 genomes]
rs7073739	0.83[EUR][1000 genomes]
rs7082683	0.83[EUR][1000 genomes]
rs7097014	0.92[AFR][1000 genomes]
rs7100623	0.92[AFR][1000 genomes]
rs73325674	0.83[EUR][1000 genomes]
rs7894448	0.88[AFR][1000 genomes]
rs7898493	0.88[AFR][1000 genomes]
rs7908111	0.88[AFR][1000 genomes]
rs7909636	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94335000-94336600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:94335000-94339600	Weak transcription	Brain Angular Gyrus	brain
3	chr10:94335200-94336800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:94335200-94338800	Weak transcription	Fetal Kidney	kidney
5	chr10:94336200-94336600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr10:94336200-94350000	Weak transcription	HepG2	liver
7	chr10:94336400-94350400	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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