Variant report

Variant	rs7082683
Chromosome Location	chr10:94357179-94357180
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94351268..94354735-chr10:94355145..94359396,3	K562	blood:

Variant related genes	Relation type
ENSG00000138160	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11187084	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593164	0.91[EUR][1000 genomes]
rs11597458	0.91[EUR][1000 genomes]
rs11817621	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244660	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244738	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244809	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246900	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12252642	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12259474	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261518	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262350	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12264712	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12779070	1.00[EUR][1000 genomes]
rs2488057	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497321	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28757342	0.91[EUR][1000 genomes]
rs3758504	0.83[EUR][1000 genomes]
rs58177786	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61011943	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7068540	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069680	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073739	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073868	1.00[ASN][1000 genomes]
rs7079602	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100344	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73325674	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914248	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94353600-94403800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94354000-94362000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr10:94354000-94372000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:94354000-94420000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:94354200-94369000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:94354200-94416000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:94354600-94361400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:94354600-94361600	Weak transcription	Fetal Lung	lung
9	chr10:94354800-94361400	Weak transcription	HMEC	breast
10	chr10:94354800-94366000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:94354800-94366000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:94354800-94373400	Weak transcription	Fetal Intestine Small	intestine
13	chr10:94355000-94358400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:94355000-94361200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:94355000-94364000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:94355000-94364000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:94355000-94366000	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:94355000-94368200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:94355000-94372200	Weak transcription	HSMM	muscle
20	chr10:94355200-94357200	Transcr. at gene 5' and 3'	Dnd41	blood
21	chr10:94355200-94358000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:94355200-94361800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:94355200-94372000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:94355400-94365600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr10:94355600-94357400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:94355600-94361600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:94355600-94361600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:94355600-94362800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:94355600-94366000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr10:94355600-94368400	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr10:94355800-94361200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr10:94355800-94369000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr10:94355800-94369200	Weak transcription	NH-A	brain
34	chr10:94355800-94369400	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr10:94356000-94358800	Enhancers	HepG2	liver
36	chr10:94356000-94367600	Weak transcription	Fetal Stomach	stomach
37	chr10:94356600-94361600	Weak transcription	Osteobl	bone
38	chr10:94356800-94357200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr10:94356800-94357200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr10:94356800-94361200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:94356800-94361400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:94356800-94361800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr10:94356800-94361800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:94356800-94366800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr10:94356800-94385600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr10:94357000-94357200	Strong transcription	A549	lung
47	chr10:94357000-94357800	Enhancers	GM12878-XiMat	blood
48	chr10:94357000-94358000	Weak transcription	Hela-S3	cervix
49	chr10:94357000-94358000	Weak transcription	NHDF-Ad	bronchial
50	chr10:94357000-94358600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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