Variant report

Variant	rs3758709
Chromosome Location	chr11:76878915-76878916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76877108..76882328-chr11:76882354..76886286,6	K562	blood:
2	chr11:76877108..76882092-chr11:76882914..76884987,4	K562	blood:
3	chr11:76878152..76880429-chr11:76885737..76888669,2	K562	blood:
4	chr11:76877684..76879888-chr11:76882658..76885632,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11601497	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11607721	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4944147	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945150	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7122221	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76864800-76882200	Weak transcription	HepG2	liver
2	chr11:76865000-76882800	Strong transcription	Fetal Intestine Large	intestine
3	chr11:76865600-76882000	Strong transcription	Fetal Intestine Small	intestine
4	chr11:76869400-76889200	Weak transcription	Pancreas	Pancrea
5	chr11:76873600-76883000	Weak transcription	Ovary	ovary
6	chr11:76876400-76882800	Weak transcription	Esophagus	oesophagus
7	chr11:76877400-76879400	Enhancers	Primary hematopoietic stem cells	blood
8	chr11:76877600-76879200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:76877600-76879200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:76877600-76879200	Strong transcription	Liver	Liver
11	chr11:76877600-76884000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:76877800-76879000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr11:76877800-76879200	Enhancers	Spleen	Spleen
14	chr11:76878000-76881200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:76878200-76879000	Enhancers	Placenta	Placenta
16	chr11:76878400-76879000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr11:76878400-76879400	Enhancers	HUVEC	blood vessel
18	chr11:76878600-76879000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:76878600-76879000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:76878600-76879000	Enhancers	Lung	lung
21	chr11:76878600-76880200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:76878800-76879000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr11:76878800-76879200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr11:76878800-76880200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:76878800-76881400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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