Variant report

Variant	rs4945150
Chromosome Location	chr11:76865617-76865618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76861588..76863857-chr11:76864093..76865763,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11237123	1.00[JPT][hapmap]
rs11237141	1.00[JPT][hapmap]
rs11237148	1.00[JPT][hapmap]
rs11237150	1.00[JPT][hapmap]
rs11237164	1.00[JPT][hapmap]
rs1125619	1.00[JPT][hapmap]
rs11601497	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11607721	0.84[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12361757	1.00[JPT][hapmap]
rs12363707	1.00[JPT][hapmap]
rs12363944	1.00[JPT][hapmap]
rs12366261	1.00[JPT][hapmap]
rs12793619	1.00[JPT][hapmap]
rs1670449	1.00[JPT][hapmap]
rs1670458	1.00[JPT][hapmap]
rs1670462	1.00[JPT][hapmap]
rs17824184	1.00[JPT][hapmap]
rs2156567	1.00[JPT][hapmap]
rs2725820	1.00[JPT][hapmap]
rs2725822	1.00[JPT][hapmap]
rs3758709	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs493256	1.00[JPT][hapmap]
rs4944147	0.84[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs580624	1.00[JPT][hapmap]
rs686068	1.00[JPT][hapmap]
rs7118943	1.00[JPT][hapmap]
rs7122221	0.82[EUR][1000 genomes]
rs7932850	0.81[EUR][1000 genomes]
rs883224	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76852800-76873000	Weak transcription	Ovary	ovary
2	chr11:76855200-76866600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr11:76858400-76866600	Enhancers	Primary hematopoietic stem cells	blood
4	chr11:76858600-76867400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:76859400-76866600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:76859600-76865800	Enhancers	Fetal Thymus	thymus
7	chr11:76859600-76869000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:76859600-76869200	Weak transcription	Gastric	stomach
9	chr11:76861600-76865800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:76861600-76867600	Enhancers	Fetal Muscle Leg	muscle
11	chr11:76862200-76865800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:76862200-76866000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr11:76862200-76866600	Enhancers	Primary T cells fromperipheralblood	blood
14	chr11:76862200-76867200	Enhancers	Placenta	Placenta
15	chr11:76862400-76867200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:76862400-76872000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:76862600-76866000	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr11:76862800-76866000	Enhancers	Primary T cells from cord blood	blood
19	chr11:76862800-76866000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr11:76862800-76866400	Enhancers	Brain Cingulate Gyrus	brain
21	chr11:76862800-76866400	Enhancers	HSMMtube	muscle
22	chr11:76862800-76866600	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr11:76863000-76866000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:76863000-76866000	Enhancers	Brain Hippocampus Middle	brain
25	chr11:76863200-76868200	Weak transcription	Pancreas	Pancrea
26	chr11:76863800-76866000	Enhancers	Liver	Liver
27	chr11:76863800-76866000	Enhancers	Brain Anterior Caudate	brain
28	chr11:76863800-76866000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:76863800-76866000	Enhancers	Brain Substantia Nigra	brain
30	chr11:76863800-76866000	Bivalent Enhancer	Fetal Stomach	stomach
31	chr11:76863800-76866000	Enhancers	Right Ventricle	heart
32	chr11:76863800-76866400	Enhancers	Duodenum Mucosa	Duodenum
33	chr11:76863800-76866600	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr11:76863800-76866600	Enhancers	Adipose Nuclei	Adipose
35	chr11:76864000-76865800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr11:76864000-76866000	Enhancers	Dnd41	blood
37	chr11:76864200-76866200	Enhancers	Brain Germinal Matrix	brain
38	chr11:76864400-76866000	Enhancers	Psoas Muscle	Psoas
39	chr11:76864600-76865800	Enhancers	Lung	lung
40	chr11:76864600-76867000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr11:76864800-76866200	Enhancers	Brain Angular Gyrus	brain
42	chr11:76864800-76882200	Weak transcription	HepG2	liver
43	chr11:76865000-76865800	Enhancers	Fetal Brain Male	brain
44	chr11:76865000-76882800	Strong transcription	Fetal Intestine Large	intestine
45	chr11:76865200-76866000	Enhancers	Stomach Smooth Muscle	stomach
46	chr11:76865200-76866000	Enhancers	Thymus	Thymus
47	chr11:76865200-76866600	Enhancers	Colon Smooth Muscle	Colon
48	chr11:76865400-76866000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:76865400-76866000	Enhancers	Left Ventricle	heart
50	chr11:76865400-76866000	Enhancers	Right Atrium	heart

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