Variant report

Variant	rs375947376
Chromosome Location	chr6:164431537-164431538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830858	chr6:164296054-164455743	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1019703	chr6:164424683-164488780	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv1796945	chr6:164430826-164448156	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164429800-164434800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:164430000-164431600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:164430000-164431600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:164430000-164433400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:164430800-164431800	Weak transcription	Brain Substantia Nigra	brain
6	chr6:164431000-164431800	Enhancers	Brain Angular Gyrus	brain
7	chr6:164431000-164432200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:164431000-164432600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:164431200-164431600	Enhancers	Right Ventricle	heart
10	chr6:164431200-164431800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:164431200-164432000	Enhancers	Brain Cingulate Gyrus	brain
12	chr6:164431200-164432000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:164431200-164432000	Enhancers	HSMMtube	muscle
14	chr6:164431200-164432200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:164431200-164432200	Enhancers	Brain Anterior Caudate	brain
16	chr6:164431200-164432200	Enhancers	Fetal Muscle Leg	muscle
17	chr6:164431200-164432400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:164431400-164431800	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr6:164431400-164432000	Enhancers	Fetal Muscle Trunk	muscle
20	chr6:164431400-164432000	Enhancers	Left Ventricle	heart
21	chr6:164431400-164432000	Enhancers	Psoas Muscle	Psoas
22	chr6:164431400-164432200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:164431400-164432200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr6:164431400-164432600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links