Variant report

Variant	rs3759838
Chromosome Location	chr15:40450569-40450570
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40407953..40409735-chr15:40448787..40451780,2	K562	blood:
2	chr15:40447852..40449370-chr15:40450050..40452943,2	K562	blood:
3	chr15:40332774..40337127-chr15:40449212..40452234,6	K562	blood:
4	chr15:40334698..40337127-chr15:40449687..40452234,2	K562	blood:
5	chr15:40447852..40449701-chr15:40449877..40452943,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11858141	0.82[JPT][hapmap]
rs16970385	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16970391	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28501335	1.00[ASN][1000 genomes]
rs28792493	1.00[ASN][1000 genomes]
rs2934776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs534838	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57543880	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58902242	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58995872	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59793325	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61436050	0.82[ASN][1000 genomes]
rs631665	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs796389	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40443200-40452800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr15:40447800-40451000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:40447800-40452800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:40447800-40452800	Weak transcription	Right Atrium	heart
5	chr15:40448000-40450800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr15:40448000-40452800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr15:40448000-40452800	Weak transcription	Fetal Intestine Large	intestine
8	chr15:40448200-40452600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:40448200-40452800	Weak transcription	Colonic Mucosa	Colon
10	chr15:40448200-40452800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr15:40448200-40452800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:40448400-40452400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:40448400-40452400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr15:40448400-40452600	Weak transcription	HMEC	breast
15	chr15:40448400-40452800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr15:40448400-40452800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr15:40448600-40450600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr15:40448600-40452400	Weak transcription	Fetal Thymus	thymus
19	chr15:40448600-40452600	Weak transcription	Fetal Kidney	kidney
20	chr15:40448600-40452800	Weak transcription	Esophagus	oesophagus
21	chr15:40448600-40452800	Weak transcription	Fetal Lung	lung
22	chr15:40448600-40452800	Weak transcription	Gastric	stomach
23	chr15:40448600-40452800	Weak transcription	Lung	lung
24	chr15:40448600-40452800	Weak transcription	NHEK	skin
25	chr15:40448800-40452600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr15:40448800-40452600	Weak transcription	GM12878-XiMat	blood
27	chr15:40448800-40452800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr15:40448800-40452800	Weak transcription	Pancreas	Pancrea
29	chr15:40449000-40450600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr15:40449200-40452600	Weak transcription	Stomach Mucosa	stomach
31	chr15:40449400-40452800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr15:40449400-40452800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr15:40449600-40452600	Enhancers	K562	blood
34	chr15:40449800-40450600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr15:40449800-40450800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr15:40449800-40450800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:40449800-40450800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr15:40449800-40450800	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr15:40449800-40451000	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr15:40449800-40451000	Enhancers	Placenta	Placenta
41	chr15:40449800-40452800	Weak transcription	Primary T cells from cord blood	blood
42	chr15:40450000-40450600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr15:40450000-40450600	Enhancers	Fetal Intestine Small	intestine
44	chr15:40450200-40450600	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr15:40450200-40450800	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr15:40450400-40450600	Enhancers	Primary B cells from cord blood	blood
47	chr15:40450400-40450600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr15:40450400-40451800	Enhancers	HepG2	liver
49	chr15:40450400-40452600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr15:40450400-40452600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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