Variant report

Variant	rs28792493
Chromosome Location	chr15:40482786-40482787
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40476784..40479145-chr15:40481469..40483471,2	K562	blood:

Variant related genes	Relation type
ENSG00000156970	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11070254	1.00[EUR][1000 genomes]
rs11070255	1.00[EUR][1000 genomes]
rs12102172	1.00[EUR][1000 genomes]
rs12385956	1.00[EUR][1000 genomes]
rs13380113	1.00[EUR][1000 genomes]
rs13380241	1.00[EUR][1000 genomes]
rs1494534	1.00[EUR][1000 genomes]
rs16970385	0.82[ASN][1000 genomes]
rs16970391	0.82[ASN][1000 genomes]
rs1801528	1.00[EUR][1000 genomes]
rs1869906	1.00[EUR][1000 genomes]
rs28390245	1.00[EUR][1000 genomes]
rs28417868	1.00[EUR][1000 genomes]
rs28485685	1.00[EUR][1000 genomes]
rs28501335	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28526743	1.00[EUR][1000 genomes]
rs28561898	1.00[EUR][1000 genomes]
rs28565228	1.00[EUR][1000 genomes]
rs28606396	1.00[EUR][1000 genomes]
rs28637656	1.00[EUR][1000 genomes]
rs28637697	1.00[EUR][1000 genomes]
rs28657938	1.00[EUR][1000 genomes]
rs28668026	1.00[EUR][1000 genomes]
rs28673302	1.00[EUR][1000 genomes]
rs28744626	1.00[EUR][1000 genomes]
rs28750294	1.00[EUR][1000 genomes]
rs28844897	1.00[EUR][1000 genomes]
rs28869227	1.00[EUR][1000 genomes]
rs2934776	0.82[ASN][1000 genomes]
rs35611758	1.00[EUR][1000 genomes]
rs3759838	1.00[ASN][1000 genomes]
rs534838	0.82[ASN][1000 genomes]
rs55984256	1.00[EUR][1000 genomes]
rs56010221	1.00[EUR][1000 genomes]
rs56888636	1.00[EUR][1000 genomes]
rs57029027	1.00[EUR][1000 genomes]
rs57543880	0.82[ASN][1000 genomes]
rs58216655	1.00[EUR][1000 genomes]
rs58584688	1.00[EUR][1000 genomes]
rs58870954	1.00[EUR][1000 genomes]
rs58902242	0.82[ASN][1000 genomes]
rs58995872	0.82[ASN][1000 genomes]
rs59793325	0.82[ASN][1000 genomes]
rs60743501	1.00[EUR][1000 genomes]
rs60889301	1.00[EUR][1000 genomes]
rs61436050	0.82[ASN][1000 genomes]
rs61579851	1.00[EUR][1000 genomes]
rs61678895	1.00[EUR][1000 genomes]
rs631665	0.82[ASN][1000 genomes]
rs6492943	1.00[EUR][1000 genomes]
rs7164281	1.00[EUR][1000 genomes]
rs7168394	1.00[EUR][1000 genomes]
rs7168416	1.00[EUR][1000 genomes]
rs7173239	1.00[EUR][1000 genomes]
rs7175153	1.00[EUR][1000 genomes]
rs7178873	1.00[EUR][1000 genomes]
rs73377835	1.00[EUR][1000 genomes]
rs73389487	1.00[EUR][1000 genomes]
rs73389489	1.00[EUR][1000 genomes]
rs73389492	1.00[EUR][1000 genomes]
rs73389507	1.00[EUR][1000 genomes]
rs73389520	1.00[EUR][1000 genomes]
rs73389531	1.00[EUR][1000 genomes]
rs73389536	1.00[EUR][1000 genomes]
rs73389540	1.00[EUR][1000 genomes]
rs73390146	1.00[EUR][1000 genomes]
rs73390155	1.00[EUR][1000 genomes]
rs73390162	1.00[EUR][1000 genomes]
rs73390167	1.00[EUR][1000 genomes]
rs73390168	1.00[EUR][1000 genomes]
rs73390187	1.00[EUR][1000 genomes]
rs73392641	1.00[EUR][1000 genomes]
rs796389	0.91[ASN][1000 genomes]
rs8023956	1.00[EUR][1000 genomes]
rs8026988	1.00[EUR][1000 genomes]
rs8364	1.00[EUR][1000 genomes]
rs9672591	1.00[EUR][1000 genomes]
rs9806126	1.00[EUR][1000 genomes]
rs9806144	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40453800-40525000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:40454000-40515200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:40454600-40502400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:40454800-40524200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:40455400-40530400	Weak transcription	Fetal Brain Female	brain
6	chr15:40455600-40518200	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr15:40455600-40522200	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:40455600-40530400	Weak transcription	Brain Germinal Matrix	brain
9	chr15:40456200-40524000	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:40456200-40524000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr15:40461600-40486800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:40464000-40485000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:40464000-40490200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr15:40465000-40489600	Weak transcription	Fetal Intestine Large	intestine
15	chr15:40468400-40485800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:40471400-40517600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:40471400-40524400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:40473200-40517800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr15:40473600-40487400	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr15:40473600-40525200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:40474200-40483000	Strong transcription	H9 Cell Line	embryonic stem cell
22	chr15:40474200-40485000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:40474400-40485400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:40474800-40482800	Strong transcription	Fetal Muscle Trunk	muscle
25	chr15:40475000-40491600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr15:40475000-40526400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr15:40475400-40488800	Weak transcription	NH-A	brain
28	chr15:40475400-40522600	Strong transcription	Dnd41	blood
29	chr15:40475600-40490000	Strong transcription	Fetal Thymus	thymus
30	chr15:40475800-40483600	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr15:40476200-40489400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr15:40476400-40483400	Strong transcription	Fetal Stomach	stomach
33	chr15:40476600-40490000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr15:40476800-40491600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr15:40477200-40485200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
36	chr15:40477800-40483000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr15:40478000-40489600	Weak transcription	Primary B cells from cord blood	blood
38	chr15:40478400-40482800	Weak transcription	Osteobl	bone
39	chr15:40479400-40492200	Weak transcription	Fetal Kidney	kidney
40	chr15:40480000-40483000	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr15:40480000-40483600	Strong transcription	Hela-S3	cervix
42	chr15:40480000-40485400	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr15:40480200-40489200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr15:40480600-40500000	Weak transcription	Fetal Intestine Small	intestine
45	chr15:40481000-40482800	Strong transcription	GM12878-XiMat	blood
46	chr15:40481000-40483400	Strong transcription	Thymus	Thymus
47	chr15:40481000-40487600	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr15:40481200-40483000	Strong transcription	K562	blood
49	chr15:40481400-40483000	Strong transcription	Fetal Lung	lung
50	chr15:40481400-40485600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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