Variant report

Variant	rs56888636
Chromosome Location	chr15:40393612-40393613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40361459..40366979-chr15:40389781..40395512,5	MCF-7	breast:
2	chr15:40377744..40380085-chr15:40392736..40394463,2	K562	blood:
3	chr15:40345188..40347486-chr15:40391657..40395509,4	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11070254	1.00[EUR][1000 genomes]
rs11070255	1.00[EUR][1000 genomes]
rs12102172	1.00[EUR][1000 genomes]
rs12385956	1.00[EUR][1000 genomes]
rs13380113	1.00[EUR][1000 genomes]
rs13380241	1.00[EUR][1000 genomes]
rs1494534	1.00[EUR][1000 genomes]
rs1801528	1.00[EUR][1000 genomes]
rs1869906	1.00[EUR][1000 genomes]
rs28390245	1.00[EUR][1000 genomes]
rs28395838	1.00[AMR][1000 genomes]
rs28395842	1.00[AMR][1000 genomes]
rs28417868	1.00[EUR][1000 genomes]
rs28485685	1.00[EUR][1000 genomes]
rs28501335	1.00[EUR][1000 genomes]
rs28526743	1.00[EUR][1000 genomes]
rs28561898	1.00[EUR][1000 genomes]
rs28565228	1.00[EUR][1000 genomes]
rs28606396	1.00[EUR][1000 genomes]
rs28637656	1.00[EUR][1000 genomes]
rs28637697	1.00[EUR][1000 genomes]
rs28657938	1.00[EUR][1000 genomes]
rs28668026	1.00[EUR][1000 genomes]
rs28673302	1.00[EUR][1000 genomes]
rs28744626	1.00[EUR][1000 genomes]
rs28750294	1.00[EUR][1000 genomes]
rs28792493	1.00[EUR][1000 genomes]
rs28844897	1.00[EUR][1000 genomes]
rs28869227	1.00[EUR][1000 genomes]
rs35611758	1.00[EUR][1000 genomes]
rs56188519	1.00[AMR][1000 genomes]
rs57029027	1.00[EUR][1000 genomes]
rs57481256	1.00[AMR][1000 genomes]
rs58216655	1.00[EUR][1000 genomes]
rs58584688	1.00[EUR][1000 genomes]
rs60743501	1.00[EUR][1000 genomes]
rs60889301	1.00[EUR][1000 genomes]
rs7164281	1.00[EUR][1000 genomes]
rs7168394	1.00[EUR][1000 genomes]
rs7168416	1.00[EUR][1000 genomes]
rs7178873	1.00[EUR][1000 genomes]
rs73377835	1.00[EUR][1000 genomes]
rs73389487	1.00[EUR][1000 genomes]
rs73389489	1.00[EUR][1000 genomes]
rs73389492	1.00[EUR][1000 genomes]
rs73389507	1.00[EUR][1000 genomes]
rs73389520	1.00[EUR][1000 genomes]
rs73389531	1.00[EUR][1000 genomes]
rs73389536	1.00[EUR][1000 genomes]
rs73389540	1.00[EUR][1000 genomes]
rs73390146	1.00[EUR][1000 genomes]
rs73390155	1.00[EUR][1000 genomes]
rs73390162	1.00[EUR][1000 genomes]
rs73390167	1.00[EUR][1000 genomes]
rs73390168	1.00[EUR][1000 genomes]
rs73390187	1.00[EUR][1000 genomes]
rs73392641	1.00[EUR][1000 genomes]
rs74013044	1.00[AMR][1000 genomes]
rs74013045	1.00[AMR][1000 genomes]
rs74013046	1.00[AMR][1000 genomes]
rs8026988	1.00[EUR][1000 genomes]
rs8364	1.00[EUR][1000 genomes]
rs9806126	1.00[EUR][1000 genomes]
rs9806144	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40383400-40394000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr15:40387200-40395600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:40387200-40397800	Enhancers	Fetal Muscle Leg	muscle
4	chr15:40387400-40395200	Enhancers	NHLF	lung
5	chr15:40387600-40395200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:40387600-40397200	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr15:40388000-40393800	Enhancers	Fetal Kidney	kidney
8	chr15:40389000-40394400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr15:40389200-40400000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:40389600-40393800	Enhancers	HUVEC	blood vessel
11	chr15:40389800-40394000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:40389800-40394200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr15:40389800-40400400	Enhancers	Small Intestine	intestine
14	chr15:40390200-40394200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr15:40390400-40399800	Transcr. at gene 5' and 3'	Thymus	Thymus
16	chr15:40390800-40394000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:40390800-40394200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr15:40391000-40393800	Weak transcription	HMEC	breast
19	chr15:40391000-40394600	Weak transcription	Fetal Brain Male	brain
20	chr15:40391000-40395000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr15:40391000-40395000	Enhancers	Adipose Nuclei	Adipose
22	chr15:40391000-40399800	Enhancers	Liver	Liver
23	chr15:40391200-40395200	Enhancers	Duodenum Mucosa	Duodenum
24	chr15:40391200-40398800	Enhancers	Placenta	Placenta
25	chr15:40391400-40394200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr15:40391400-40394200	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr15:40391400-40394200	Enhancers	Hela-S3	cervix
28	chr15:40391400-40394400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr15:40391400-40394600	Weak transcription	Aorta	Aorta
30	chr15:40391400-40394800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:40391400-40394800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr15:40391400-40395000	Enhancers	Primary T cells fromperipheralblood	blood
33	chr15:40391400-40395000	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr15:40391400-40395000	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr15:40391400-40395200	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr15:40391400-40395400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:40391400-40395400	Enhancers	HSMM	muscle
38	chr15:40391400-40396600	Genic enhancers	Fetal Thymus	thymus
39	chr15:40391400-40396800	Enhancers	Muscle Satellite Cultured Cells	--
40	chr15:40391400-40397600	Enhancers	NH-A	brain
41	chr15:40391400-40400000	Enhancers	Stomach Mucosa	stomach
42	chr15:40391600-40394000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr15:40391600-40394200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr15:40391600-40394200	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr15:40391600-40394200	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr15:40391600-40394400	Enhancers	Primary T cells from cord blood	blood
47	chr15:40391600-40394800	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr15:40391600-40394800	Weak transcription	Fetal Brain Female	brain
49	chr15:40391600-40394800	Enhancers	Fetal Heart	heart
50	chr15:40391600-40394800	Weak transcription	Placenta Amnion	Placenta Amnion

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