Variant report

Variant	rs9806144
Chromosome Location	chr15:40464981-40464982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40333994..40336667-chr15:40464159..40466672,2	K562	blood:
2	chr15:40464134..40466311-chr15:40467677..40469915,3	K562	blood:
3	chr15:40459484..40463009-chr15:40464134..40467795,7	K562	blood:
4	chr15:40463800..40466311-chr15:40468415..40471239,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11070254	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11070255	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12102172	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12385956	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13380113	1.00[EUR][1000 genomes]
rs13380241	1.00[MEX][hapmap];0.80[MKK][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1494534	1.00[MEX][hapmap];0.85[MKK][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1801528	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1869906	1.00[EUR][1000 genomes]
rs28390245	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28417868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28418337	0.87[AMR][1000 genomes]
rs28485685	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28501335	1.00[EUR][1000 genomes]
rs28526743	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28561898	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28565228	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28606396	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28637656	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28637697	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28657938	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28668026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28673302	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28744626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28750294	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28792493	1.00[EUR][1000 genomes]
rs28844897	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28869227	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35611758	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56888636	1.00[EUR][1000 genomes]
rs57029027	1.00[EUR][1000 genomes]
rs58216655	1.00[EUR][1000 genomes]
rs58355728	0.87[AMR][1000 genomes]
rs58584688	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60743501	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60889301	1.00[EUR][1000 genomes]
rs6492943	1.00[EUR][1000 genomes]
rs7164281	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168394	0.92[ASW][hapmap];0.90[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168416	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7173239	1.00[EUR][1000 genomes]
rs7178873	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73377835	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389487	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389489	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389492	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389507	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389531	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389536	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389540	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73390146	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73390155	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73390162	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73390167	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73390168	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73390187	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391309	0.87[AMR][1000 genomes]
rs73391316	0.87[AMR][1000 genomes]
rs73392641	1.00[EUR][1000 genomes]
rs8023956	1.00[EUR][1000 genomes]
rs8026988	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8364	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9672591	1.00[EUR][1000 genomes]
rs967945	0.87[AMR][1000 genomes]
rs9806126	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40453800-40474600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr15:40453800-40525000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:40454000-40471000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr15:40454000-40474600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr15:40454000-40515200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:40454200-40471400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr15:40454600-40502400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:40454800-40465600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:40454800-40474400	Weak transcription	Primary B cells from cord blood	blood
10	chr15:40454800-40524200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:40455000-40474600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:40455000-40474600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:40455200-40465800	Weak transcription	Fetal Kidney	kidney
14	chr15:40455400-40468800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:40455400-40530400	Weak transcription	Fetal Brain Female	brain
16	chr15:40455600-40470800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:40455600-40477600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr15:40455600-40518200	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr15:40455600-40522200	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr15:40455600-40530400	Weak transcription	Brain Germinal Matrix	brain
21	chr15:40456000-40470600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:40456200-40466400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr15:40456200-40467000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:40456200-40469000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr15:40456200-40471600	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr15:40456200-40471600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr15:40456200-40524000	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr15:40456200-40524000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr15:40456400-40466000	Strong transcription	K562	blood
30	chr15:40456600-40471400	Strong transcription	Fetal Thymus	thymus
31	chr15:40457000-40471600	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr15:40457400-40473200	Strong transcription	Dnd41	blood
33	chr15:40457400-40476000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr15:40460800-40466800	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr15:40460800-40466800	Strong transcription	HMEC	breast
36	chr15:40461600-40486800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr15:40461800-40466200	Strong transcription	H9 Cell Line	embryonic stem cell
38	chr15:40461800-40466200	Strong transcription	HUVEC	blood vessel
39	chr15:40462000-40465200	Strong transcription	Fetal Muscle Trunk	muscle
40	chr15:40462000-40465200	Strong transcription	Fetal Muscle Leg	muscle
41	chr15:40462000-40465200	Strong transcription	NHEK	skin
42	chr15:40462000-40465400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:40462000-40465400	Strong transcription	A549	lung
44	chr15:40462000-40466200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr15:40462000-40466800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:40462200-40465000	Strong transcription	NHDF-Ad	bronchial
47	chr15:40462200-40465800	Strong transcription	Hela-S3	cervix
48	chr15:40462200-40466000	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr15:40462200-40466400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr15:40462200-40466400	Strong transcription	GM12878-XiMat	blood

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