Variant report

Variant	rs1869906
Chromosome Location	chr15:40537319-40537320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:40529899..40531576-chr15:40536263..40537822,2	MCF-7	breast:
2	chr15:40537059..40538375-chr15:40566657..40567392,4	MCF-7	breast:
3	chr15:40528587..40530538-chr15:40537200..40540005,3	K562	blood:
4	chr15:40537194..40537865-chr15:40566649..40567440,2	MCF-7	breast:
5	chr15:40534203..40535931-chr15:40537304..40539884,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BUB1B-2	chr15:40537126-40539567	NONHSAT041817

No data

Variant related genes	Relation type
ENSG00000137843	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs11070254	1.00[EUR][1000 genomes]
rs11070255	1.00[EUR][1000 genomes]
rs12102172	1.00[EUR][1000 genomes]
rs12385956	1.00[EUR][1000 genomes]
rs13380113	1.00[EUR][1000 genomes]
rs13380241	1.00[EUR][1000 genomes]
rs1494534	1.00[EUR][1000 genomes]
rs1801528	1.00[EUR][1000 genomes]
rs28390245	1.00[EUR][1000 genomes]
rs28417868	1.00[EUR][1000 genomes]
rs28485685	1.00[EUR][1000 genomes]
rs28501335	1.00[EUR][1000 genomes]
rs28526743	1.00[EUR][1000 genomes]
rs28561898	1.00[EUR][1000 genomes]
rs28565228	1.00[EUR][1000 genomes]
rs28606396	1.00[EUR][1000 genomes]
rs28637656	1.00[EUR][1000 genomes]
rs28637697	1.00[EUR][1000 genomes]
rs28657938	1.00[EUR][1000 genomes]
rs28668026	1.00[EUR][1000 genomes]
rs28673302	1.00[EUR][1000 genomes]
rs28744626	1.00[EUR][1000 genomes]
rs28750294	1.00[EUR][1000 genomes]
rs28792493	1.00[EUR][1000 genomes]
rs28844897	1.00[EUR][1000 genomes]
rs28869227	1.00[EUR][1000 genomes]
rs35611758	1.00[EUR][1000 genomes]
rs55984256	1.00[EUR][1000 genomes]
rs56010221	1.00[EUR][1000 genomes]
rs56888636	1.00[EUR][1000 genomes]
rs57029027	1.00[EUR][1000 genomes]
rs58216655	1.00[EUR][1000 genomes]
rs58534825	1.00[AMR][1000 genomes]
rs58584688	1.00[EUR][1000 genomes]
rs58870954	1.00[EUR][1000 genomes]
rs60743501	1.00[EUR][1000 genomes]
rs60889301	1.00[EUR][1000 genomes]
rs61579851	1.00[EUR][1000 genomes]
rs61678895	1.00[EUR][1000 genomes]
rs6492943	1.00[EUR][1000 genomes]
rs6492946	1.00[EUR][1000 genomes]
rs7164094	1.00[EUR][1000 genomes]
rs7164281	1.00[EUR][1000 genomes]
rs7165233	1.00[EUR][1000 genomes]
rs7168197	1.00[EUR][1000 genomes]
rs7168394	1.00[EUR][1000 genomes]
rs7168416	1.00[EUR][1000 genomes]
rs7173239	1.00[EUR][1000 genomes]
rs7175153	1.00[EUR][1000 genomes]
rs7178873	1.00[EUR][1000 genomes]
rs7182052	1.00[EUR][1000 genomes]
rs73377835	1.00[EUR][1000 genomes]
rs73383123	1.00[EUR][1000 genomes]
rs73383129	1.00[EUR][1000 genomes]
rs73385108	1.00[EUR][1000 genomes]
rs73385110	1.00[EUR][1000 genomes]
rs73385112	1.00[EUR][1000 genomes]
rs73385114	1.00[EUR][1000 genomes]
rs73389487	1.00[EUR][1000 genomes]
rs73389489	1.00[EUR][1000 genomes]
rs73389492	1.00[EUR][1000 genomes]
rs73389507	1.00[EUR][1000 genomes]
rs73389520	1.00[EUR][1000 genomes]
rs73389531	1.00[EUR][1000 genomes]
rs73389536	1.00[EUR][1000 genomes]
rs73389540	1.00[EUR][1000 genomes]
rs73390146	1.00[EUR][1000 genomes]
rs73390155	1.00[EUR][1000 genomes]
rs73390162	1.00[EUR][1000 genomes]
rs73390167	1.00[EUR][1000 genomes]
rs73390168	1.00[EUR][1000 genomes]
rs73390187	1.00[EUR][1000 genomes]
rs73392641	1.00[EUR][1000 genomes]
rs8023956	1.00[EUR][1000 genomes]
rs8026988	1.00[EUR][1000 genomes]
rs8039298	1.00[EUR][1000 genomes]
rs8364	1.00[EUR][1000 genomes]
rs9672591	1.00[EUR][1000 genomes]
rs9672893	1.00[EUR][1000 genomes]
rs9806126	1.00[EUR][1000 genomes]
rs9806144	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv904095	chr15:40525430-40591570	Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv471240	chr15:40528155-40595627	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40531800-40542400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:40532200-40537400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr15:40533600-40540200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:40533800-40543400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:40534000-40539200	Enhancers	Esophagus	oesophagus
6	chr15:40534000-40539400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:40534000-40544400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr15:40534200-40542000	Weak transcription	Brain Anterior Caudate	brain
9	chr15:40534600-40542000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:40535000-40538800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:40535800-40539800	Enhancers	HMEC	breast
12	chr15:40536200-40542000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr15:40536400-40541400	Weak transcription	K562	blood
14	chr15:40537000-40537600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr15:40537000-40537600	Bivalent Enhancer	Placenta	Placenta
16	chr15:40537000-40538200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr15:40537000-40538200	Enhancers	Fetal Lung	lung
18	chr15:40537000-40538200	Enhancers	Placenta Amnion	Placenta Amnion
19	chr15:40537000-40538400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:40537000-40538400	Enhancers	Pancreas	Pancrea
21	chr15:40537000-40538600	Enhancers	NHEK	skin
22	chr15:40537000-40539400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:40537000-40539600	Enhancers	Fetal Intestine Large	intestine
24	chr15:40537000-40539800	Enhancers	Fetal Intestine Small	intestine
25	chr15:40537000-40540800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:40537200-40537400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:40537200-40537400	Enhancers	Stomach Mucosa	stomach
28	chr15:40537200-40537600	Flanking Active TSS	HepG2	liver
29	chr15:40537200-40537800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:40537200-40537800	Enhancers	Fetal Thymus	thymus
31	chr15:40537200-40538000	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr15:40537200-40538200	Enhancers	H1 Cell Line	embryonic stem cell
33	chr15:40537200-40538200	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr15:40537200-40538200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr15:40537200-40538200	Enhancers	Gastric	stomach
36	chr15:40537200-40539200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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