Variant report

Variant	rs7168197
Chromosome Location	chr15:40715682-40715683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40713682..40716417-chr15:40720904..40723012,2	MCF-7	breast:
2	chr15:40709951..40712517-chr15:40713358..40716210,2	K562	blood:
3	chr15:40613324..40616013-chr15:40714259..40715828,2	K562	blood:
4	chr15:40715093..40719455-chr15:40720778..40725123,5	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11070255	1.00[EUR][1000 genomes]
rs14363	1.00[EUR][1000 genomes]
rs1494534	1.00[EUR][1000 genomes]
rs1869906	1.00[EUR][1000 genomes]
rs28750294	1.00[EUR][1000 genomes]
rs34268290	1.00[AMR][1000 genomes]
rs35611758	1.00[EUR][1000 genomes]
rs55984256	1.00[EUR][1000 genomes]
rs56010221	1.00[EUR][1000 genomes]
rs56020318	1.00[EUR][1000 genomes]
rs56908156	1.00[EUR][1000 genomes]
rs57134155	1.00[EUR][1000 genomes]
rs58042425	1.00[EUR][1000 genomes]
rs58584688	1.00[EUR][1000 genomes]
rs58870954	1.00[EUR][1000 genomes]
rs58903833	1.00[EUR][1000 genomes]
rs61579851	1.00[EUR][1000 genomes]
rs61678895	1.00[EUR][1000 genomes]
rs6492943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6492946	1.00[EUR][1000 genomes]
rs6492948	1.00[EUR][1000 genomes]
rs6492949	1.00[EUR][1000 genomes]
rs7162308	1.00[EUR][1000 genomes]
rs7164094	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7165233	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7165670	1.00[EUR][1000 genomes]
rs7168416	1.00[EUR][1000 genomes]
rs7173079	1.00[EUR][1000 genomes]
rs7173239	1.00[EUR][1000 genomes]
rs7175153	1.00[EUR][1000 genomes]
rs7176418	1.00[EUR][1000 genomes]
rs7182052	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73383123	1.00[EUR][1000 genomes]
rs73383129	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73385108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73385110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73385112	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73385114	1.00[EUR][1000 genomes]
rs73389487	1.00[EUR][1000 genomes]
rs73389489	1.00[EUR][1000 genomes]
rs73389492	1.00[EUR][1000 genomes]
rs74011172	1.00[EUR][1000 genomes]
rs74011173	1.00[EUR][1000 genomes]
rs74011174	1.00[EUR][1000 genomes]
rs8023956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8025846	1.00[EUR][1000 genomes]
rs8033915	1.00[EUR][1000 genomes]
rs8034169	1.00[EUR][1000 genomes]
rs8037881	1.00[EUR][1000 genomes]
rs8038243	1.00[EUR][1000 genomes]
rs8039298	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8040231	1.00[EUR][1000 genomes]
rs8364	1.00[EUR][1000 genomes]
rs9672591	1.00[EUR][1000 genomes]
rs9672893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv510660	chr15:40552906-40721883	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40705600-40727200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr15:40708400-40721200	Weak transcription	Fetal Kidney	kidney
3	chr15:40708400-40728000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:40710000-40718600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr15:40710800-40727000	Weak transcription	Primary T cells from cord blood	blood
6	chr15:40710800-40728000	Weak transcription	Aorta	Aorta
7	chr15:40711000-40719400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr15:40711000-40721400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:40711000-40722000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:40711000-40724800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr15:40711800-40726600	Weak transcription	Thymus	Thymus
12	chr15:40714200-40717000	Weak transcription	HSMMtube	muscle
13	chr15:40714200-40719400	Weak transcription	Gastric	stomach
14	chr15:40714200-40719400	Weak transcription	Lung	lung
15	chr15:40714200-40719400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr15:40714200-40720200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr15:40714200-40722400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr15:40714200-40726800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr15:40714200-40727800	Weak transcription	Brain Angular Gyrus	brain
20	chr15:40714200-40727800	Weak transcription	Esophagus	oesophagus
21	chr15:40714200-40728000	Weak transcription	Brain Substantia Nigra	brain
22	chr15:40714200-40728000	Weak transcription	Right Ventricle	heart
23	chr15:40714400-40716000	Weak transcription	Fetal Stomach	stomach
24	chr15:40714400-40716400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr15:40714400-40717000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr15:40714400-40717000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr15:40714400-40719200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:40714400-40719200	Weak transcription	Ovary	ovary
29	chr15:40714400-40719200	Weak transcription	Spleen	Spleen
30	chr15:40714400-40719400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr15:40714400-40719400	Weak transcription	Fetal Thymus	thymus
32	chr15:40714400-40719800	Weak transcription	Colon Smooth Muscle	Colon
33	chr15:40714400-40720200	Weak transcription	Fetal Brain Female	brain
34	chr15:40714400-40720600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr15:40714400-40721400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr15:40714400-40722200	Weak transcription	Adipose Nuclei	Adipose
37	chr15:40714400-40722200	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr15:40714400-40722400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr15:40714400-40722400	Weak transcription	HSMM	muscle
40	chr15:40714400-40725000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:40714400-40726400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:40714400-40727800	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr15:40714400-40727800	Weak transcription	Right Atrium	heart
44	chr15:40714400-40728000	Weak transcription	Brain Anterior Caudate	brain
45	chr15:40714600-40717200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr15:40714600-40718800	Weak transcription	Primary B cells from peripheral blood	blood
47	chr15:40714600-40718800	Weak transcription	K562	blood
48	chr15:40714600-40719000	Weak transcription	Fetal Intestine Small	intestine
49	chr15:40714600-40720200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr15:40714600-40722800	Weak transcription	Monocytes-CD14+_RO01746	blood

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