Variant report

Variant	rs7165233
Chromosome Location	chr15:40711670-40711671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40709951..40712517-chr15:40713358..40716210,2	K562	blood:
2	chr15:40704069..40706922-chr15:40710416..40713548,3	MCF-7	breast:
3	chr15:40705175..40706688-chr15:40711087..40713954,2	MCF-7	breast:
4	chr15:40708302..40709831-chr15:40711317..40714236,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128928	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11070255	1.00[EUR][1000 genomes]
rs14363	1.00[EUR][1000 genomes]
rs1494534	1.00[EUR][1000 genomes]
rs1869906	1.00[EUR][1000 genomes]
rs28637697	1.00[EUR][1000 genomes]
rs28750294	1.00[EUR][1000 genomes]
rs35611758	1.00[EUR][1000 genomes]
rs55984256	1.00[EUR][1000 genomes]
rs56010221	1.00[EUR][1000 genomes]
rs56020318	1.00[EUR][1000 genomes]
rs56908156	1.00[EUR][1000 genomes]
rs57134155	1.00[EUR][1000 genomes]
rs58042425	1.00[EUR][1000 genomes]
rs58584688	1.00[EUR][1000 genomes]
rs58870954	1.00[EUR][1000 genomes]
rs58903833	1.00[EUR][1000 genomes]
rs61579851	1.00[EUR][1000 genomes]
rs61678895	1.00[EUR][1000 genomes]
rs6492943	1.00[EUR][1000 genomes]
rs6492946	1.00[EUR][1000 genomes]
rs6492948	1.00[EUR][1000 genomes]
rs6492949	1.00[EUR][1000 genomes]
rs7162308	1.00[EUR][1000 genomes]
rs7164094	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164281	1.00[EUR][1000 genomes]
rs7165670	1.00[EUR][1000 genomes]
rs7168197	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7168416	1.00[EUR][1000 genomes]
rs7173079	1.00[EUR][1000 genomes]
rs7173239	1.00[EUR][1000 genomes]
rs7175153	1.00[EUR][1000 genomes]
rs7176418	1.00[EUR][1000 genomes]
rs7182052	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73383123	1.00[EUR][1000 genomes]
rs73383129	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73385108	1.00[EUR][1000 genomes]
rs73385110	1.00[EUR][1000 genomes]
rs73385112	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73385114	1.00[EUR][1000 genomes]
rs73389487	1.00[EUR][1000 genomes]
rs73389489	1.00[EUR][1000 genomes]
rs73389492	1.00[EUR][1000 genomes]
rs74011172	1.00[EUR][1000 genomes]
rs74011173	1.00[EUR][1000 genomes]
rs74011174	1.00[EUR][1000 genomes]
rs8023956	1.00[EUR][1000 genomes]
rs8025846	1.00[EUR][1000 genomes]
rs8033915	1.00[EUR][1000 genomes]
rs8034169	1.00[EUR][1000 genomes]
rs8037881	1.00[EUR][1000 genomes]
rs8038243	1.00[EUR][1000 genomes]
rs8039298	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8040231	1.00[EUR][1000 genomes]
rs8364	1.00[EUR][1000 genomes]
rs9672591	1.00[EUR][1000 genomes]
rs9672893	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv510660	chr15:40552906-40721883	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40698600-40712400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:40699000-40714000	Weak transcription	Small Intestine	intestine
3	chr15:40699600-40712400	Weak transcription	Right Atrium	heart
4	chr15:40699600-40714000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:40699800-40712400	Strong transcription	Fetal Stomach	stomach
6	chr15:40700000-40711800	Strong transcription	Thymus	Thymus
7	chr15:40700000-40712200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:40700000-40712600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:40700200-40712600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:40704200-40713800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr15:40704400-40714000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr15:40705200-40712800	Strong transcription	Fetal Intestine Small	intestine
13	chr15:40705600-40727200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr15:40708000-40712400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:40708000-40713200	Weak transcription	HUVEC	blood vessel
16	chr15:40708200-40711800	Weak transcription	Hela-S3	cervix
17	chr15:40708200-40713800	Weak transcription	Primary B cells from cord blood	blood
18	chr15:40708400-40712200	Weak transcription	NH-A	brain
19	chr15:40708400-40713000	Weak transcription	Psoas Muscle	Psoas
20	chr15:40708400-40713600	Weak transcription	NHDF-Ad	bronchial
21	chr15:40708400-40714000	Weak transcription	Fetal Brain Male	brain
22	chr15:40708400-40721200	Weak transcription	Fetal Kidney	kidney
23	chr15:40708400-40728000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:40708600-40713200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr15:40708600-40713800	Weak transcription	GM12878-XiMat	blood
26	chr15:40708600-40714000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr15:40708600-40714000	Weak transcription	A549	lung
28	chr15:40708800-40712000	Weak transcription	Pancreas	Pancrea
29	chr15:40709000-40712600	Weak transcription	NHEK	skin
30	chr15:40709000-40713200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr15:40709000-40714000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr15:40709200-40712400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr15:40709200-40712400	Weak transcription	Stomach Mucosa	stomach
34	chr15:40710000-40712400	Weak transcription	Fetal Heart	heart
35	chr15:40710000-40718600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr15:40710400-40713800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr15:40710600-40713000	Weak transcription	HSMM	muscle
38	chr15:40710600-40713200	Weak transcription	Brain Substantia Nigra	brain
39	chr15:40710600-40713600	Weak transcription	Brain Angular Gyrus	brain
40	chr15:40710800-40712400	Weak transcription	HSMMtube	muscle
41	chr15:40710800-40712800	Weak transcription	Placenta	Placenta
42	chr15:40710800-40713000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr15:40710800-40713000	Weak transcription	Fetal Thymus	thymus
44	chr15:40710800-40713000	Weak transcription	Right Ventricle	heart
45	chr15:40710800-40713200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr15:40710800-40713200	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr15:40710800-40713200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr15:40710800-40713600	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr15:40710800-40713800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr15:40710800-40714000	Weak transcription	Rectal Smooth Muscle	rectum

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