Variant report

Variant	rs6492949
Chromosome Location	chr15:40786183-40786184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40763768..40766540-chr15:40784281..40786409,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs14363	1.00[EUR][1000 genomes]
rs55984256	1.00[EUR][1000 genomes]
rs56010221	1.00[EUR][1000 genomes]
rs56020318	1.00[EUR][1000 genomes]
rs56195430	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56282449	0.97[AFR][1000 genomes]
rs56908156	1.00[EUR][1000 genomes]
rs57134155	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58042425	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58870954	1.00[EUR][1000 genomes]
rs58903833	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61579851	1.00[EUR][1000 genomes]
rs61668695	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61678895	1.00[EUR][1000 genomes]
rs6492943	1.00[EUR][1000 genomes]
rs6492946	1.00[EUR][1000 genomes]
rs6492948	1.00[EUR][1000 genomes]
rs7162308	1.00[EUR][1000 genomes]
rs7164094	1.00[EUR][1000 genomes]
rs7165233	1.00[EUR][1000 genomes]
rs7165670	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168197	1.00[EUR][1000 genomes]
rs7173079	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7173239	1.00[EUR][1000 genomes]
rs7175153	1.00[EUR][1000 genomes]
rs7176418	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7182052	1.00[EUR][1000 genomes]
rs73383123	1.00[EUR][1000 genomes]
rs73383129	1.00[EUR][1000 genomes]
rs73385108	1.00[EUR][1000 genomes]
rs73385110	1.00[EUR][1000 genomes]
rs73385112	1.00[EUR][1000 genomes]
rs73385114	1.00[EUR][1000 genomes]
rs74011172	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74011173	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74011174	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8023956	1.00[EUR][1000 genomes]
rs8025846	1.00[EUR][1000 genomes]
rs8033915	1.00[EUR][1000 genomes]
rs8034169	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8037881	1.00[EUR][1000 genomes]
rs8038243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8039298	1.00[EUR][1000 genomes]
rs8040231	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9672591	1.00[EUR][1000 genomes]
rs9672893	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40785000-40786600	Enhancers	Primary T cells fromperipheralblood	blood
2	chr15:40785000-40786600	Enhancers	Dnd41	blood
3	chr15:40785000-40786800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr15:40785200-40786200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:40785200-40786200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:40785200-40786400	Enhancers	NHEK	skin
7	chr15:40785200-40786600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr15:40785200-40786600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:40785200-40786600	Enhancers	HMEC	breast
10	chr15:40785400-40786400	Enhancers	Hela-S3	cervix
11	chr15:40785600-40786200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr15:40785600-40786200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr15:40785600-40786200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr15:40785600-40786600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:40785600-40787200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr15:40785800-40786200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:40785800-40786200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:40785800-40786200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:40785800-40786200	Enhancers	Small Intestine	intestine
20	chr15:40785800-40786400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr15:40785800-40786600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:40785800-40786800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:40785800-40786800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr15:40785800-40787000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr15:40786000-40786800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr15:40786000-40786800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr15:40786000-40789600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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