Variant report

Variant	rs7164094
Chromosome Location	chr15:40723710-40723711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40722675..40724219-chr15:40730433..40732610,2	MCF-7	breast:
2	chr15:40721609..40723938-chr15:40763922..40765689,2	K562	blood:
3	chr15:40715093..40719455-chr15:40720778..40725123,5	K562	blood:
4	chr15:40720491..40723802-chr15:40727203..40729063,3	MCF-7	breast:
5	chr15:40696421..40698417-chr15:40722960..40725733,2	MCF-7	breast:
6	chr15:40721609..40724539-chr15:40764189..40766844,2	K562	blood:

Variant related genes	Relation type
ENSG00000140320	Chromatin interaction
ENSG00000128928	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs14363	1.00[EUR][1000 genomes]
rs1869906	1.00[EUR][1000 genomes]
rs55984256	1.00[EUR][1000 genomes]
rs56010221	1.00[EUR][1000 genomes]
rs56020318	1.00[EUR][1000 genomes]
rs56908156	1.00[EUR][1000 genomes]
rs57134155	1.00[EUR][1000 genomes]
rs58042425	1.00[EUR][1000 genomes]
rs58870954	1.00[EUR][1000 genomes]
rs58903833	1.00[EUR][1000 genomes]
rs61579851	1.00[EUR][1000 genomes]
rs61678895	1.00[EUR][1000 genomes]
rs6492943	1.00[EUR][1000 genomes]
rs6492946	1.00[EUR][1000 genomes]
rs6492948	1.00[EUR][1000 genomes]
rs6492949	1.00[EUR][1000 genomes]
rs7162308	1.00[EUR][1000 genomes]
rs7165233	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7165670	1.00[EUR][1000 genomes]
rs7168197	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7173079	1.00[EUR][1000 genomes]
rs7173239	1.00[EUR][1000 genomes]
rs7175153	1.00[EUR][1000 genomes]
rs7176418	1.00[EUR][1000 genomes]
rs7182052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73383123	1.00[EUR][1000 genomes]
rs73383129	1.00[EUR][1000 genomes]
rs73385108	1.00[EUR][1000 genomes]
rs73385110	1.00[EUR][1000 genomes]
rs73385112	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73385114	1.00[EUR][1000 genomes]
rs73389492	1.00[EUR][1000 genomes]
rs74011172	1.00[EUR][1000 genomes]
rs74011173	1.00[EUR][1000 genomes]
rs74011174	1.00[EUR][1000 genomes]
rs8023956	1.00[EUR][1000 genomes]
rs8025846	1.00[EUR][1000 genomes]
rs8033915	1.00[EUR][1000 genomes]
rs8034169	1.00[EUR][1000 genomes]
rs8037881	1.00[EUR][1000 genomes]
rs8038243	1.00[EUR][1000 genomes]
rs8039298	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8040231	1.00[EUR][1000 genomes]
rs9672591	1.00[EUR][1000 genomes]
rs9672893	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40705600-40727200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr15:40708400-40728000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:40710800-40727000	Weak transcription	Primary T cells from cord blood	blood
4	chr15:40710800-40728000	Weak transcription	Aorta	Aorta
5	chr15:40711000-40724800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr15:40711800-40726600	Weak transcription	Thymus	Thymus
7	chr15:40714200-40726800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:40714200-40727800	Weak transcription	Brain Angular Gyrus	brain
9	chr15:40714200-40727800	Weak transcription	Esophagus	oesophagus
10	chr15:40714200-40728000	Weak transcription	Brain Substantia Nigra	brain
11	chr15:40714200-40728000	Weak transcription	Right Ventricle	heart
12	chr15:40714400-40725000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:40714400-40726400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:40714400-40727800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr15:40714400-40727800	Weak transcription	Right Atrium	heart
16	chr15:40714400-40728000	Weak transcription	Brain Anterior Caudate	brain
17	chr15:40714600-40724400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:40719600-40727600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr15:40719600-40727800	Weak transcription	Spleen	Spleen
20	chr15:40719600-40728000	Weak transcription	Lung	lung
21	chr15:40719800-40725600	Weak transcription	Ovary	ovary
22	chr15:40719800-40727600	Weak transcription	Gastric	stomach
23	chr15:40721600-40724600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:40722600-40726200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:40723000-40724600	Weak transcription	Fetal Intestine Small	intestine
26	chr15:40723000-40726200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:40723000-40727600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr15:40723200-40724400	Weak transcription	K562	blood
29	chr15:40723400-40727000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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