Variant report

Variant	rs8037881
Chromosome Location	chr15:40899021-40899022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40884637..40889853-chr15:40895293..40899936,6	K562	blood:
2	chr15:40884808..40888126-chr15:40896275..40900248,4	K562	blood:

Variant related genes	Relation type
ENSG00000137812	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs14363	1.00[EUR][1000 genomes]
rs55984256	1.00[EUR][1000 genomes]
rs56010221	1.00[EUR][1000 genomes]
rs56020318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56908156	1.00[EUR][1000 genomes]
rs57134155	1.00[EUR][1000 genomes]
rs58042425	1.00[EUR][1000 genomes]
rs58870954	1.00[EUR][1000 genomes]
rs58903833	1.00[EUR][1000 genomes]
rs59204074	1.00[AMR][1000 genomes]
rs60163307	1.00[AMR][1000 genomes]
rs61579851	1.00[EUR][1000 genomes]
rs61678895	1.00[EUR][1000 genomes]
rs6492946	1.00[EUR][1000 genomes]
rs6492948	1.00[EUR][1000 genomes]
rs6492949	1.00[EUR][1000 genomes]
rs7162253	1.00[AMR][1000 genomes]
rs7162308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164094	1.00[EUR][1000 genomes]
rs7165233	1.00[EUR][1000 genomes]
rs7165670	1.00[EUR][1000 genomes]
rs7167831	1.00[AMR][1000 genomes]
rs7168197	1.00[EUR][1000 genomes]
rs7168217	1.00[AMR][1000 genomes]
rs7173079	1.00[EUR][1000 genomes]
rs7175153	1.00[EUR][1000 genomes]
rs7176418	1.00[EUR][1000 genomes]
rs7178058	1.00[AMR][1000 genomes]
rs7182052	1.00[EUR][1000 genomes]
rs73383123	1.00[EUR][1000 genomes]
rs73383129	1.00[EUR][1000 genomes]
rs73385108	1.00[EUR][1000 genomes]
rs73385110	1.00[EUR][1000 genomes]
rs73385112	1.00[EUR][1000 genomes]
rs73385114	1.00[EUR][1000 genomes]
rs74011172	1.00[EUR][1000 genomes]
rs74011173	1.00[EUR][1000 genomes]
rs74011174	1.00[EUR][1000 genomes]
rs74011933	1.00[AMR][1000 genomes]
rs74011936	1.00[AMR][1000 genomes]
rs8025846	1.00[EUR][1000 genomes]
rs8033915	1.00[EUR][1000 genomes]
rs8034169	1.00[EUR][1000 genomes]
rs8037717	1.00[AMR][1000 genomes]
rs8038243	1.00[EUR][1000 genomes]
rs8039169	1.00[AMR][1000 genomes]
rs8039298	1.00[EUR][1000 genomes]
rs8040231	1.00[EUR][1000 genomes]
rs9672224	1.00[AMR][1000 genomes]
rs9672893	1.00[EUR][1000 genomes]
rs9744142	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2758378	chr15:40832545-40995111	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv2760026	chr15:40832545-40995111	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40887600-40902600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr15:40887600-40941800	Weak transcription	Fetal Intestine Large	intestine
3	chr15:40887800-40902000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:40887800-40933200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr15:40887800-40942200	Weak transcription	Primary B cells from cord blood	blood
6	chr15:40887800-40948200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:40887800-40961600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr15:40888000-40899400	Weak transcription	HSMM	muscle
9	chr15:40888000-40901200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr15:40888000-40903400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:40888000-40956000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:40888200-40902200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr15:40888200-40912800	Weak transcription	HMEC	breast
14	chr15:40888400-40899800	Weak transcription	HUVEC	blood vessel
15	chr15:40888400-40900800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr15:40888400-40913200	Weak transcription	NHDF-Ad	bronchial
17	chr15:40888400-40913600	Weak transcription	NHLF	lung
18	chr15:40888400-40923200	Weak transcription	Osteobl	bone
19	chr15:40888400-40925800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:40888400-40944200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr15:40889600-40901400	Weak transcription	HepG2	liver
22	chr15:40890800-40904800	Weak transcription	A549	lung
23	chr15:40890800-40925200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:40893400-40907200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:40893600-40922600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr15:40895000-40903200	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr15:40895800-40899600	Strong transcription	Thymus	Thymus
28	chr15:40895800-40905200	Strong transcription	Fetal Thymus	thymus
29	chr15:40895800-40905600	Strong transcription	Dnd41	blood
30	chr15:40896000-40910200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr15:40896800-40910400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr15:40897800-40899200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr15:40897800-40903000	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr15:40897800-40957200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:40898000-40899600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:40898000-40900000	Strong transcription	GM12878-XiMat	blood
37	chr15:40898000-40900000	Strong transcription	K562	blood
38	chr15:40898000-40900200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:40898000-40902600	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr15:40898000-40905400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:40898200-40903200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr15:40898200-40907800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr15:40898600-40899600	Strong transcription	Primary hematopoietic stem cells	blood
44	chr15:40898600-40900000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:40898800-40899400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr15:40898800-40899400	Strong transcription	Fetal Intestine Small	intestine
47	chr15:40898800-40899400	Strong transcription	Fetal Stomach	stomach
48	chr15:40898800-40899600	Strong transcription	Fetal Muscle Trunk	muscle
49	chr15:40898800-40899600	Strong transcription	Fetal Muscle Leg	muscle
50	chr15:40898800-40900000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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