Variant report

Variant	rs7165670
Chromosome Location	chr15:40850905-40850906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40849898..40854344-chr15:40855565..40858408,6	K562	blood:
2	chr15:40729710..40731654-chr15:40849849..40851885,2	MCF-7	breast:
3	chr15:40848640..40851135-chr15:40883399..40886206,2	K562	blood:

Variant related genes	Relation type
ENSG00000128891	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs14363	1.00[EUR][1000 genomes]
rs55984256	1.00[EUR][1000 genomes]
rs56010221	1.00[EUR][1000 genomes]
rs56020318	1.00[EUR][1000 genomes]
rs56195430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56908156	1.00[EUR][1000 genomes]
rs57134155	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58042425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58870954	1.00[EUR][1000 genomes]
rs58903833	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61579851	1.00[EUR][1000 genomes]
rs61668695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61678895	1.00[EUR][1000 genomes]
rs6492943	1.00[EUR][1000 genomes]
rs6492946	1.00[EUR][1000 genomes]
rs6492948	1.00[EUR][1000 genomes]
rs6492949	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7162308	1.00[EUR][1000 genomes]
rs7164094	1.00[EUR][1000 genomes]
rs7165233	1.00[EUR][1000 genomes]
rs7168197	1.00[EUR][1000 genomes]
rs7173079	1.00[EUR][1000 genomes]
rs7173239	1.00[EUR][1000 genomes]
rs7173685	0.89[AFR][1000 genomes]
rs7175153	1.00[EUR][1000 genomes]
rs7176418	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7182052	1.00[EUR][1000 genomes]
rs73383123	1.00[EUR][1000 genomes]
rs73383129	1.00[EUR][1000 genomes]
rs73385108	1.00[EUR][1000 genomes]
rs73385110	1.00[EUR][1000 genomes]
rs73385112	1.00[EUR][1000 genomes]
rs73385114	1.00[EUR][1000 genomes]
rs74011172	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74011173	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74011174	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8023956	1.00[EUR][1000 genomes]
rs8025846	1.00[EUR][1000 genomes]
rs8033915	1.00[EUR][1000 genomes]
rs8034169	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8037881	1.00[EUR][1000 genomes]
rs8038243	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8039298	1.00[EUR][1000 genomes]
rs8040231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9672893	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2758378	chr15:40832545-40995111	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2760026	chr15:40832545-40995111	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40821800-40856400	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:40822600-40856400	Weak transcription	Small Intestine	intestine
3	chr15:40828000-40856600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:40831600-40856600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:40838000-40856400	Weak transcription	A549	lung
6	chr15:40838600-40852800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr15:40838600-40855600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr15:40840000-40856400	Weak transcription	Fetal Brain Female	brain
9	chr15:40840000-40856600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:40842400-40856200	Weak transcription	Colonic Mucosa	Colon
11	chr15:40843200-40856400	Weak transcription	Fetal Heart	heart
12	chr15:40843800-40856400	Weak transcription	HSMMtube	muscle
13	chr15:40846000-40855600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:40846200-40851000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr15:40846200-40855000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:40846200-40856200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr15:40846400-40853400	Weak transcription	Thymus	Thymus
18	chr15:40846600-40851200	Weak transcription	Fetal Stomach	stomach
19	chr15:40846600-40853800	Weak transcription	Spleen	Spleen
20	chr15:40846600-40855000	Weak transcription	Psoas Muscle	Psoas
21	chr15:40846600-40855800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr15:40846600-40856400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:40846600-40856400	Weak transcription	Right Atrium	heart
24	chr15:40846600-40856600	Weak transcription	Aorta	Aorta
25	chr15:40846600-40856600	Weak transcription	Gastric	stomach
26	chr15:40846800-40856000	Weak transcription	Stomach Mucosa	stomach
27	chr15:40847000-40851200	Weak transcription	Left Ventricle	heart
28	chr15:40847200-40855000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:40847200-40855600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:40847200-40856400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr15:40847400-40855000	Weak transcription	Fetal Brain Male	brain
32	chr15:40847400-40856200	Weak transcription	Brain Germinal Matrix	brain
33	chr15:40847400-40856400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr15:40847400-40856600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr15:40848000-40854000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr15:40848000-40856400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr15:40848000-40856400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr15:40848000-40856400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr15:40848000-40856400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr15:40848400-40854400	Weak transcription	Hela-S3	cervix
41	chr15:40848400-40856400	Weak transcription	NHDF-Ad	bronchial
42	chr15:40848600-40852600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr15:40848600-40853800	Weak transcription	Right Ventricle	heart
44	chr15:40848600-40854000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:40848600-40854000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr15:40848600-40854200	Weak transcription	Ovary	ovary
47	chr15:40848600-40854200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr15:40848600-40855000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr15:40848600-40855000	Weak transcription	Brain Anterior Caudate	brain
50	chr15:40848600-40855200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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