Variant report

Variant	rs7176418
Chromosome Location	chr15:40844254-40844255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40838153..40840572-chr15:40843027..40845104,2	K562	blood:
2	chr15:40843890..40844391-chr6:10886712..10887656,2	HCT-116	colon:
3	chr15:40842151..40844272-chr15:40844325..40846704,2	K562	blood:
4	chr15:40837677..40839661-chr15:40843684..40846554,2	K562	blood:

Variant related genes	Relation type
ENSG00000153157	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs14363	1.00[EUR][1000 genomes]
rs55984256	1.00[EUR][1000 genomes]
rs56010221	1.00[EUR][1000 genomes]
rs56020318	1.00[EUR][1000 genomes]
rs56195430	1.00[AFR][1000 genomes]
rs56908156	1.00[EUR][1000 genomes]
rs57134155	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58042425	1.00[EUR][1000 genomes]
rs58870954	1.00[EUR][1000 genomes]
rs58903833	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61579851	1.00[EUR][1000 genomes]
rs61668695	1.00[AFR][1000 genomes]
rs61678895	1.00[EUR][1000 genomes]
rs6492943	1.00[EUR][1000 genomes]
rs6492946	1.00[EUR][1000 genomes]
rs6492948	1.00[EUR][1000 genomes]
rs6492949	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7162308	1.00[EUR][1000 genomes]
rs7164094	1.00[EUR][1000 genomes]
rs7165233	1.00[EUR][1000 genomes]
rs7165670	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7168197	1.00[EUR][1000 genomes]
rs7173079	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7173239	1.00[EUR][1000 genomes]
rs7173685	0.89[AFR][1000 genomes]
rs7175153	1.00[EUR][1000 genomes]
rs7182052	1.00[EUR][1000 genomes]
rs73383123	1.00[EUR][1000 genomes]
rs73383129	1.00[EUR][1000 genomes]
rs73385108	1.00[EUR][1000 genomes]
rs73385110	1.00[EUR][1000 genomes]
rs73385112	1.00[EUR][1000 genomes]
rs73385114	1.00[EUR][1000 genomes]
rs74011172	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74011173	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74011174	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8023956	1.00[EUR][1000 genomes]
rs8025846	1.00[EUR][1000 genomes]
rs8033915	1.00[EUR][1000 genomes]
rs8034169	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8037881	1.00[EUR][1000 genomes]
rs8038243	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8039298	1.00[EUR][1000 genomes]
rs8040231	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9672893	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2758378	chr15:40832545-40995111	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2760026	chr15:40832545-40995111	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40816800-40845600	Weak transcription	Ovary	ovary
2	chr15:40819600-40845000	Weak transcription	Pancreas	Pancrea
3	chr15:40821400-40848000	Weak transcription	Brain Anterior Caudate	brain
4	chr15:40821800-40856400	Weak transcription	Colon Smooth Muscle	Colon
5	chr15:40822600-40856400	Weak transcription	Small Intestine	intestine
6	chr15:40828000-40856600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:40829200-40845200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:40829400-40845000	Weak transcription	NHLF	lung
9	chr15:40829600-40845000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:40829600-40845200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:40829800-40845400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:40829800-40846000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:40831600-40856600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:40831800-40845800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:40832000-40844800	Weak transcription	Aorta	Aorta
16	chr15:40832000-40845600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:40832000-40845800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:40832600-40845200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:40833400-40845200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:40834600-40845200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr15:40837800-40845200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr15:40838000-40845200	Genic enhancers	Primary B cells from peripheral blood	blood
23	chr15:40838000-40848200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr15:40838000-40856400	Weak transcription	A549	lung
25	chr15:40838200-40845800	Weak transcription	Brain Germinal Matrix	brain
26	chr15:40838200-40846600	Strong transcription	Fetal Intestine Small	intestine
27	chr15:40838600-40847000	Weak transcription	Fetal Brain Male	brain
28	chr15:40838600-40852800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr15:40838600-40855600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr15:40838800-40846200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr15:40838800-40846600	Strong transcription	Fetal Stomach	stomach
32	chr15:40839000-40845800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr15:40839000-40847200	Weak transcription	Brain Angular Gyrus	brain
34	chr15:40839200-40845800	Weak transcription	Stomach Mucosa	stomach
35	chr15:40839200-40848600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:40839200-40849000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr15:40839200-40849000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr15:40839200-40849600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr15:40839200-40850000	Strong transcription	Fetal Thymus	thymus
40	chr15:40839400-40846600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr15:40839400-40847800	Weak transcription	HUVEC	blood vessel
42	chr15:40839400-40849600	Strong transcription	HMEC	breast
43	chr15:40839400-40850000	Strong transcription	Fetal Intestine Large	intestine
44	chr15:40839600-40845200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr15:40839600-40845400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr15:40839600-40847600	Weak transcription	NHDF-Ad	bronchial
47	chr15:40839600-40849800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr15:40839800-40848200	Weak transcription	HepG2	liver
49	chr15:40840000-40848000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr15:40840000-40856400	Weak transcription	Fetal Brain Female	brain

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