Variant report

Variant	rs7173079
Chromosome Location	chr15:40816409-40816410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs14363	1.00[EUR][1000 genomes]
rs55984256	1.00[EUR][1000 genomes]
rs56010221	1.00[EUR][1000 genomes]
rs56020318	1.00[EUR][1000 genomes]
rs56908156	1.00[EUR][1000 genomes]
rs57134155	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58042425	1.00[EUR][1000 genomes]
rs58870954	1.00[EUR][1000 genomes]
rs58903833	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61579851	1.00[EUR][1000 genomes]
rs61678895	1.00[EUR][1000 genomes]
rs6492943	1.00[EUR][1000 genomes]
rs6492946	1.00[EUR][1000 genomes]
rs6492948	1.00[EUR][1000 genomes]
rs6492949	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7162308	1.00[EUR][1000 genomes]
rs7164094	1.00[EUR][1000 genomes]
rs7165233	1.00[EUR][1000 genomes]
rs7165670	1.00[EUR][1000 genomes]
rs7168197	1.00[EUR][1000 genomes]
rs7173239	1.00[EUR][1000 genomes]
rs7175153	1.00[EUR][1000 genomes]
rs7176418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7182052	1.00[EUR][1000 genomes]
rs73383123	1.00[EUR][1000 genomes]
rs73383129	1.00[EUR][1000 genomes]
rs73385108	1.00[EUR][1000 genomes]
rs73385110	1.00[EUR][1000 genomes]
rs73385112	1.00[EUR][1000 genomes]
rs73385114	1.00[EUR][1000 genomes]
rs74011172	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74011173	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74011174	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8023956	1.00[EUR][1000 genomes]
rs8025846	1.00[EUR][1000 genomes]
rs8033915	1.00[EUR][1000 genomes]
rs8034169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8037881	1.00[EUR][1000 genomes]
rs8038243	1.00[EUR][1000 genomes]
rs8039298	1.00[EUR][1000 genomes]
rs8040231	1.00[EUR][1000 genomes]
rs9672591	1.00[EUR][1000 genomes]
rs9672893	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40804400-40821000	Weak transcription	Right Atrium	heart
2	chr15:40805200-40828200	Weak transcription	Placenta	Placenta
3	chr15:40805200-40833000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:40812400-40817800	Weak transcription	Esophagus	oesophagus
5	chr15:40812400-40817800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr15:40812400-40817800	Weak transcription	Pancreas	Pancrea
7	chr15:40812400-40818800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:40812400-40820200	Weak transcription	Fetal Stomach	stomach
9	chr15:40812400-40828600	Weak transcription	Primary T cells from cord blood	blood
10	chr15:40812400-40828600	Weak transcription	Right Ventricle	heart
11	chr15:40812400-40828800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:40812400-40828800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:40812400-40829000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:40812400-40829000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:40812400-40831000	Weak transcription	Thymus	Thymus
16	chr15:40812400-40837800	Weak transcription	Lung	lung
17	chr15:40812600-40818200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:40812600-40826000	Weak transcription	Adipose Nuclei	Adipose
19	chr15:40812600-40826400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr15:40812600-40827000	Weak transcription	Spleen	Spleen
21	chr15:40812600-40831400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:40812600-40840600	Weak transcription	Hela-S3	cervix
23	chr15:40816200-40816600	Enhancers	GM12878-XiMat	blood
24	chr15:40816200-40820600	Weak transcription	Fetal Intestine Small	intestine

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