Variant report

Variant	rs61678895
Chromosome Location	chr15:40691883-40691884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40674023..40677701-chr15:40688521..40691902,3	MCF-7	breast:
2	chr15:40674079..40683588-chr15:40684131..40692224,17	K562	blood:
3	chr15:40671643..40673805-chr15:40689651..40692222,2	K562	blood:
4	chr15:40670502..40673143-chr15:40690722..40692887,2	K562	blood:
5	chr15:40685564..40689200-chr15:40689211..40693750,5	K562	blood:

Variant related genes	Relation type
ENSG00000128944	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11070255	1.00[EUR][1000 genomes]
rs12102172	1.00[EUR][1000 genomes]
rs12385956	1.00[EUR][1000 genomes]
rs13380241	1.00[EUR][1000 genomes]
rs14363	1.00[EUR][1000 genomes]
rs1494534	1.00[EUR][1000 genomes]
rs1801528	1.00[EUR][1000 genomes]
rs1869906	1.00[EUR][1000 genomes]
rs28565228	1.00[EUR][1000 genomes]
rs28637697	1.00[EUR][1000 genomes]
rs28657938	1.00[EUR][1000 genomes]
rs28750294	1.00[EUR][1000 genomes]
rs28792493	1.00[EUR][1000 genomes]
rs28844897	1.00[EUR][1000 genomes]
rs35611758	1.00[EUR][1000 genomes]
rs55984256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56010221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56020318	1.00[EUR][1000 genomes]
rs56908156	1.00[EUR][1000 genomes]
rs57134155	1.00[EUR][1000 genomes]
rs58042425	1.00[EUR][1000 genomes]
rs58584688	1.00[EUR][1000 genomes]
rs58870954	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58903833	1.00[EUR][1000 genomes]
rs61579851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61653673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6492943	1.00[EUR][1000 genomes]
rs6492946	1.00[EUR][1000 genomes]
rs6492948	1.00[EUR][1000 genomes]
rs6492949	1.00[EUR][1000 genomes]
rs7162308	1.00[EUR][1000 genomes]
rs7164094	1.00[EUR][1000 genomes]
rs7164281	1.00[EUR][1000 genomes]
rs7165233	1.00[EUR][1000 genomes]
rs7165670	1.00[EUR][1000 genomes]
rs7168197	1.00[EUR][1000 genomes]
rs7168416	1.00[EUR][1000 genomes]
rs7173079	1.00[EUR][1000 genomes]
rs7173239	1.00[EUR][1000 genomes]
rs7175153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7176418	1.00[EUR][1000 genomes]
rs7178873	1.00[EUR][1000 genomes]
rs7182052	1.00[EUR][1000 genomes]
rs73383123	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73383129	1.00[EUR][1000 genomes]
rs73385108	1.00[EUR][1000 genomes]
rs73385110	1.00[EUR][1000 genomes]
rs73385112	1.00[EUR][1000 genomes]
rs73385114	1.00[EUR][1000 genomes]
rs73389487	1.00[EUR][1000 genomes]
rs73389489	1.00[EUR][1000 genomes]
rs73389492	1.00[EUR][1000 genomes]
rs73390155	1.00[EUR][1000 genomes]
rs73390162	1.00[EUR][1000 genomes]
rs73390167	1.00[EUR][1000 genomes]
rs73390168	1.00[EUR][1000 genomes]
rs73390187	1.00[EUR][1000 genomes]
rs74011172	1.00[EUR][1000 genomes]
rs74011173	1.00[EUR][1000 genomes]
rs74011174	1.00[EUR][1000 genomes]
rs8023956	1.00[EUR][1000 genomes]
rs8025846	1.00[EUR][1000 genomes]
rs8026988	1.00[EUR][1000 genomes]
rs8033915	1.00[EUR][1000 genomes]
rs8034169	1.00[EUR][1000 genomes]
rs8037881	1.00[EUR][1000 genomes]
rs8038243	1.00[EUR][1000 genomes]
rs8039298	1.00[EUR][1000 genomes]
rs8040231	1.00[EUR][1000 genomes]
rs8364	1.00[EUR][1000 genomes]
rs9672591	1.00[EUR][1000 genomes]
rs9672893	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv510660	chr15:40552906-40721883	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40676000-40697400	Weak transcription	Small Intestine	intestine
2	chr15:40676200-40697200	Weak transcription	Stomach Mucosa	stomach
3	chr15:40679400-40697400	Weak transcription	Brain Substantia Nigra	brain
4	chr15:40679800-40697200	Weak transcription	Ovary	ovary
5	chr15:40679800-40697600	Weak transcription	Esophagus	oesophagus
6	chr15:40685000-40697000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:40685000-40697200	Weak transcription	Spleen	Spleen
8	chr15:40686000-40697000	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:40686000-40697200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr15:40686200-40696800	Weak transcription	HepG2	liver
11	chr15:40686200-40697000	Weak transcription	Adipose Nuclei	Adipose
12	chr15:40686200-40697000	Weak transcription	Liver	Liver
13	chr15:40686200-40697000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr15:40686200-40697000	Weak transcription	Fetal Brain Male	brain
15	chr15:40686200-40697000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr15:40686200-40697200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:40686200-40697200	Weak transcription	Brain Angular Gyrus	brain
18	chr15:40686200-40697200	Weak transcription	Brain Anterior Caudate	brain
19	chr15:40686200-40697200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr15:40686200-40697200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:40686200-40697200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr15:40686200-40697400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr15:40686200-40697400	Weak transcription	Fetal Intestine Large	intestine
24	chr15:40686200-40697400	Weak transcription	Fetal Kidney	kidney
25	chr15:40686200-40697400	Weak transcription	A549	lung
26	chr15:40686400-40692600	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr15:40686400-40696800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr15:40686400-40697000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:40686400-40697000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr15:40686400-40697000	Weak transcription	Brain Germinal Matrix	brain
31	chr15:40686400-40697000	Weak transcription	Brain Hippocampus Middle	brain
32	chr15:40686400-40697000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr15:40686400-40697000	Weak transcription	Fetal Brain Female	brain
34	chr15:40686400-40697000	Weak transcription	Hela-S3	cervix
35	chr15:40686400-40697200	Weak transcription	NH-A	brain
36	chr15:40686400-40697400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr15:40686400-40697400	Weak transcription	HUVEC	blood vessel
38	chr15:40686400-40697600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr15:40686600-40696600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr15:40686600-40696800	Weak transcription	NHDF-Ad	bronchial
41	chr15:40686600-40697000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:40686600-40697400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr15:40686600-40697400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr15:40686600-40697400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr15:40686600-40697400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr15:40686800-40696000	Weak transcription	K562	blood
47	chr15:40686800-40697200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr15:40686800-40697200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr15:40686800-40697400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr15:40686800-40697400	Weak transcription	Fetal Lung	lung

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