Variant report

Variant	rs14363
Chromosome Location	chr15:40760155-40760156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:40758499-40760478	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:40731621..40739951-chr15:40753297..40765462,23	K562	blood:
2	chr15:40732257..40736129-chr15:40757677..40760458,4	MCF-7	breast:
3	chr15:40749521..40751919-chr15:40759316..40762355,3	MCF-7	breast:
4	chr15:40696797..40698991-chr15:40758926..40761295,2	K562	blood:
5	chr15:40727351..40729122-chr15:40759443..40761752,2	K562	blood:
6	chr15:40732401..40734895-chr15:40758444..40760752,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000259211	TF binding region
CHST14	TF binding region
ENSG00000128928	Chromatin interaction
ENSG00000140320	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs55984256	1.00[EUR][1000 genomes]
rs56010221	1.00[EUR][1000 genomes]
rs56020318	1.00[EUR][1000 genomes]
rs56908156	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57134155	1.00[EUR][1000 genomes]
rs58042425	1.00[EUR][1000 genomes]
rs58870954	1.00[EUR][1000 genomes]
rs58903833	1.00[EUR][1000 genomes]
rs61579851	1.00[EUR][1000 genomes]
rs61678895	1.00[EUR][1000 genomes]
rs6492943	1.00[EUR][1000 genomes]
rs6492946	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6492948	1.00[EUR][1000 genomes]
rs6492949	1.00[EUR][1000 genomes]
rs7162308	1.00[EUR][1000 genomes]
rs7164094	1.00[EUR][1000 genomes]
rs7165233	1.00[EUR][1000 genomes]
rs7165670	1.00[EUR][1000 genomes]
rs7168197	1.00[EUR][1000 genomes]
rs7173079	1.00[EUR][1000 genomes]
rs7173239	1.00[EUR][1000 genomes]
rs7175153	1.00[EUR][1000 genomes]
rs7176418	1.00[EUR][1000 genomes]
rs7182052	1.00[EUR][1000 genomes]
rs73383123	1.00[EUR][1000 genomes]
rs73383129	1.00[EUR][1000 genomes]
rs73385108	1.00[EUR][1000 genomes]
rs73385110	1.00[EUR][1000 genomes]
rs73385112	1.00[EUR][1000 genomes]
rs73385114	1.00[EUR][1000 genomes]
rs74011172	1.00[EUR][1000 genomes]
rs74011173	1.00[EUR][1000 genomes]
rs74011174	1.00[EUR][1000 genomes]
rs8023956	1.00[EUR][1000 genomes]
rs8025846	1.00[EUR][1000 genomes]
rs8033915	1.00[EUR][1000 genomes]
rs8034169	1.00[EUR][1000 genomes]
rs8037881	1.00[EUR][1000 genomes]
rs8038243	1.00[EUR][1000 genomes]
rs8039298	1.00[EUR][1000 genomes]
rs8040231	1.00[EUR][1000 genomes]
rs9672591	1.00[EUR][1000 genomes]
rs9672893	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40742400-40762200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:40747400-40762600	Weak transcription	HUVEC	blood vessel
3	chr15:40749200-40762600	Weak transcription	Psoas Muscle	Psoas
4	chr15:40749200-40762800	Weak transcription	Small Intestine	intestine
5	chr15:40749400-40762200	Weak transcription	Fetal Heart	heart
6	chr15:40749400-40762400	Weak transcription	Right Atrium	heart
7	chr15:40749800-40760800	Strong transcription	Spleen	Spleen
8	chr15:40749800-40762200	Weak transcription	Fetal Brain Male	brain
9	chr15:40750000-40761400	Strong transcription	Fetal Intestine Small	intestine
10	chr15:40750200-40760800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:40750200-40761000	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:40750400-40760200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:40750400-40760600	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr15:40750400-40761000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:40750400-40761000	Strong transcription	Fetal Stomach	stomach
16	chr15:40750400-40761200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:40750400-40761600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:40750400-40762400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:40750600-40760800	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr15:40750600-40761000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
21	chr15:40750600-40761200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:40750800-40760800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:40750800-40761600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:40751000-40760800	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr15:40751000-40760800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr15:40751000-40760800	Strong transcription	Duodenum Mucosa	Duodenum
27	chr15:40751000-40760800	Strong transcription	Fetal Intestine Large	intestine
28	chr15:40751000-40761200	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr15:40752800-40761000	Strong transcription	Stomach Smooth Muscle	stomach
30	chr15:40754000-40760200	Strong transcription	Thymus	Thymus
31	chr15:40754200-40760400	Strong transcription	Fetal Brain Female	brain
32	chr15:40754200-40760800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:40754600-40760200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:40755000-40762200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr15:40757000-40761400	Strong transcription	Placenta	Placenta
36	chr15:40757400-40760800	Strong transcription	Fetal Muscle Leg	muscle
37	chr15:40757400-40762400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr15:40757600-40761200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:40757800-40760600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:40757800-40762400	Weak transcription	Hela-S3	cervix
41	chr15:40758000-40760600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr15:40758000-40761800	Weak transcription	Osteobl	bone
43	chr15:40758000-40762000	Weak transcription	NHDF-Ad	bronchial
44	chr15:40758000-40762200	Weak transcription	Fetal Kidney	kidney
45	chr15:40758000-40762200	Weak transcription	Fetal Lung	lung
46	chr15:40758200-40760800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr15:40758200-40761200	Weak transcription	HMEC	breast
48	chr15:40758200-40762200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr15:40758200-40762200	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr15:40758200-40762200	Weak transcription	Primary B cells from cord blood	blood

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