Variant report

Variant	rs61668695
Chromosome Location	chr15:40855708-40855709
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr15:40855638-40855928	K562	blood:	n/a	chr15:40855795-40855806
2	CEBPB	chr15:40855630-40855971	IMR90	lung:	n/a	chr15:40855795-40855806
3	CEBPB	chr15:40855657-40855857	HepG2	liver:	n/a	chr15:40855795-40855806

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40854296..40857804-chr15:40884735..40887632,3	K562	blood:
2	chr15:40855657..40859262-chr15:40860971..40863634,5	MCF-7	breast:

Variant related genes	Relation type
C15orf57	TF binding region
ENSG00000137812	Chromatin interaction
ENSG00000166133	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs34974852	1.00[ASN][1000 genomes]
rs56195430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57134155	0.87[AFR][1000 genomes]
rs58042425	1.00[AMR][1000 genomes]
rs58903833	0.83[AFR][1000 genomes]
rs6492949	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7165670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7173685	0.89[AFR][1000 genomes]
rs7176418	1.00[AFR][1000 genomes]
rs74011172	0.87[AFR][1000 genomes]
rs74011173	0.83[AFR][1000 genomes]
rs74011174	0.87[AFR][1000 genomes]
rs8034169	0.85[AFR][1000 genomes]
rs8038243	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8040231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2758378	chr15:40832545-40995111	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2760026	chr15:40832545-40995111	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40821800-40856400	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:40822600-40856400	Weak transcription	Small Intestine	intestine
3	chr15:40828000-40856600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:40831600-40856600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:40838000-40856400	Weak transcription	A549	lung
6	chr15:40840000-40856400	Weak transcription	Fetal Brain Female	brain
7	chr15:40840000-40856600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:40842400-40856200	Weak transcription	Colonic Mucosa	Colon
9	chr15:40843200-40856400	Weak transcription	Fetal Heart	heart
10	chr15:40843800-40856400	Weak transcription	HSMMtube	muscle
11	chr15:40846200-40856200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr15:40846600-40855800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr15:40846600-40856400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:40846600-40856400	Weak transcription	Right Atrium	heart
15	chr15:40846600-40856600	Weak transcription	Aorta	Aorta
16	chr15:40846600-40856600	Weak transcription	Gastric	stomach
17	chr15:40846800-40856000	Weak transcription	Stomach Mucosa	stomach
18	chr15:40847200-40856400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr15:40847400-40856200	Weak transcription	Brain Germinal Matrix	brain
20	chr15:40847400-40856400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr15:40847400-40856600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr15:40848000-40856400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr15:40848000-40856400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr15:40848000-40856400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:40848000-40856400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr15:40848400-40856400	Weak transcription	NHDF-Ad	bronchial
27	chr15:40848600-40855800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr15:40848600-40856000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr15:40848600-40856200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr15:40848600-40856200	Weak transcription	HSMM	muscle
31	chr15:40848600-40856200	Weak transcription	HUVEC	blood vessel
32	chr15:40848600-40856200	Weak transcription	NHLF	lung
33	chr15:40848600-40856400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr15:40848600-40856400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr15:40848600-40856400	Weak transcription	Primary hematopoietic stem cells	blood
36	chr15:40848600-40856400	Weak transcription	Brain Substantia Nigra	brain
37	chr15:40848600-40856400	Weak transcription	NH-A	brain
38	chr15:40848800-40856200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr15:40848800-40856400	Weak transcription	Brain Angular Gyrus	brain
40	chr15:40848800-40856600	Weak transcription	Lung	lung
41	chr15:40849000-40856400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:40849000-40856600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr15:40849400-40856400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr15:40849600-40855800	Weak transcription	Primary T cells from cord blood	blood
45	chr15:40849600-40856200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:40849600-40856200	Weak transcription	Rectal Smooth Muscle	rectum
47	chr15:40849600-40856400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr15:40850000-40856200	Weak transcription	Placenta	Placenta
49	chr15:40850000-40856400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr15:40850000-40856400	Weak transcription	Fetal Kidney	kidney

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