Variant report

Variant	rs74011933
Chromosome Location	chr15:40920970-40920971
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40906002..40908287-chr15:40919819..40922697,2	K562	blood:

Variant related genes	Relation type
ENSG00000265814	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10220885	1.00[EUR][1000 genomes]
rs12323939	1.00[EUR][1000 genomes]
rs45501094	1.00[EUR][1000 genomes]
rs45571032	1.00[EUR][1000 genomes]
rs45604436	1.00[EUR][1000 genomes]
rs55906732	1.00[EUR][1000 genomes]
rs56020318	1.00[AMR][1000 genomes]
rs56229816	1.00[EUR][1000 genomes]
rs57022654	1.00[AMR][1000 genomes]
rs57242620	1.00[EUR][1000 genomes]
rs58097169	1.00[EUR][1000 genomes]
rs58681580	1.00[EUR][1000 genomes]
rs58738238	1.00[EUR][1000 genomes]
rs59204074	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59508492	1.00[EUR][1000 genomes]
rs59528823	1.00[EUR][1000 genomes]
rs59558714	1.00[EUR][1000 genomes]
rs60109064	1.00[EUR][1000 genomes]
rs60163307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60578270	1.00[EUR][1000 genomes]
rs6492948	0.91[AFR][1000 genomes]
rs6492962	1.00[EUR][1000 genomes]
rs6492963	1.00[EUR][1000 genomes]
rs7161941	1.00[EUR][1000 genomes]
rs7162253	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7162308	1.00[AMR][1000 genomes]
rs7164574	1.00[EUR][1000 genomes]
rs7166733	1.00[EUR][1000 genomes]
rs7167831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168217	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7169273	1.00[EUR][1000 genomes]
rs7171451	1.00[EUR][1000 genomes]
rs7171898	1.00[EUR][1000 genomes]
rs7172356	1.00[EUR][1000 genomes]
rs7178058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7178244	1.00[EUR][1000 genomes]
rs7182066	1.00[EUR][1000 genomes]
rs7182516	1.00[EUR][1000 genomes]
rs74011880	1.00[EUR][1000 genomes]
rs74011881	1.00[EUR][1000 genomes]
rs74011884	1.00[EUR][1000 genomes]
rs74011886	1.00[EUR][1000 genomes]
rs74011887	1.00[EUR][1000 genomes]
rs74011888	1.00[EUR][1000 genomes]
rs74011889	1.00[AMR][1000 genomes]
rs74011890	1.00[AMR][1000 genomes]
rs74011936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8035580	1.00[EUR][1000 genomes]
rs8037717	1.00[AMR][1000 genomes]
rs8037881	1.00[AMR][1000 genomes]
rs8038751	1.00[EUR][1000 genomes]
rs8039169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8039942	1.00[EUR][1000 genomes]
rs8040579	1.00[EUR][1000 genomes]
rs8040925	1.00[EUR][1000 genomes]
rs9672224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9744142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2758378	chr15:40832545-40995111	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv2760026	chr15:40832545-40995111	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1841263	chr15:40902453-40966765	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40887600-40941800	Weak transcription	Fetal Intestine Large	intestine
2	chr15:40887800-40933200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr15:40887800-40942200	Weak transcription	Primary B cells from cord blood	blood
4	chr15:40887800-40948200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:40887800-40961600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:40888000-40956000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:40888400-40923200	Weak transcription	Osteobl	bone
8	chr15:40888400-40925800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:40888400-40944200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:40890800-40925200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:40893600-40922600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:40897800-40957200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:40899400-40922600	Weak transcription	Fetal Intestine Small	intestine
14	chr15:40900000-40943600	Weak transcription	NH-A	brain
15	chr15:40903000-40922200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr15:40903000-40956000	Weak transcription	Fetal Heart	heart
17	chr15:40903600-40922600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr15:40903600-40927800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:40903600-40956600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:40903800-40955800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr15:40903800-40956600	Weak transcription	Fetal Lung	lung
22	chr15:40904800-40927800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:40906400-40930200	Strong transcription	Dnd41	blood
24	chr15:40910200-40925200	Weak transcription	Placenta	Placenta
25	chr15:40911400-40922200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr15:40911400-40930600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr15:40912200-40951400	Weak transcription	Fetal Kidney	kidney
28	chr15:40912400-40921800	Weak transcription	Fetal Stomach	stomach
29	chr15:40912600-40922200	Weak transcription	Fetal Muscle Leg	muscle
30	chr15:40912600-40941400	Weak transcription	HepG2	liver
31	chr15:40913800-40986000	Weak transcription	A549	lung
32	chr15:40914000-40921200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr15:40914000-40923400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:40914400-40960000	Weak transcription	NHLF	lung
35	chr15:40914600-40921400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr15:40914800-40921000	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr15:40914800-40922200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr15:40914800-40922200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr15:40914800-40922600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr15:40914800-40924600	Weak transcription	HMEC	breast
41	chr15:40914800-40933200	Weak transcription	NHDF-Ad	bronchial
42	chr15:40914800-40942600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr15:40915000-40922000	Weak transcription	GM12878-XiMat	blood
44	chr15:40915600-40927200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr15:40915600-40937000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr15:40915600-40937000	Weak transcription	HUVEC	blood vessel
47	chr15:40916000-40922600	Weak transcription	Fetal Muscle Trunk	muscle
48	chr15:40916200-40921200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:40916200-40927800	Weak transcription	HSMM	muscle
50	chr15:40917800-40922200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links