Variant report

Variant	rs74011890
Chromosome Location	chr15:41140217-41140218
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr15:41139377-41140431	HEK293-T-REx	kidney:	n/a	chr15:41140116-41140125

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41138287..41141935-chr15:41144190..41148215,5	MCF-7	breast:
2	chr15:41131773..41133919-chr15:41138481..41140259,2	MCF-7	breast:
3	chr15:41139200..41141682-chr15:41165309..41167444,2	K562	blood:
4	chr15:41134365..41142873-chr15:41160505..41167459,15	MCF-7	breast:
5	chr15:41137274..41141358-chr15:41148658..41151865,7	MCF-7	breast:
6	chr15:41137927..41140333-chr15:41154449..41156600,3	MCF-7	breast:
7	chr15:41097897..41099708-chr15:41139548..41142129,2	MCF-7	breast:
8	chr15:41134891..41137417-chr15:41138433..41142150,4	MCF-7	breast:
9	chr15:41140134..41142819-chr15:41186104..41187887,2	K562	blood:
10	chr15:41134440..41137372-chr15:41139724..41141861,2	MCF-7	breast:
11	chr15:41135103..41140677-chr15:41182913..41189081,12	MCF-7	breast:
12	chr15:41095442..41103026-chr15:41134658..41140625,11	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000261183	TF binding region
ENSG00000166140	Chromatin interaction
ENSG00000104129	Chromatin interaction
ENSG00000166145	Chromatin interaction
ENSG00000104140	Chromatin interaction
ENSG00000261183	Chromatin interaction
ENSG00000104142	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs28436138	1.00[AMR][1000 genomes]
rs55851751	1.00[AMR][1000 genomes]
rs57022654	1.00[AMR][1000 genomes]
rs58893179	1.00[AMR][1000 genomes]
rs59096643	1.00[AMR][1000 genomes]
rs59204074	1.00[AMR][1000 genomes]
rs60163307	1.00[AMR][1000 genomes]
rs61336574	1.00[AMR][1000 genomes]
rs7162253	1.00[AMR][1000 genomes]
rs7167831	1.00[AMR][1000 genomes]
rs7168217	1.00[AMR][1000 genomes]
rs7178058	1.00[AMR][1000 genomes]
rs74011889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74011893	1.00[AMR][1000 genomes]
rs74011933	1.00[AMR][1000 genomes]
rs74011936	1.00[AMR][1000 genomes]
rs74014709	1.00[AMR][1000 genomes]
rs74014710	1.00[AMR][1000 genomes]
rs8030883	1.00[AMR][1000 genomes]
rs8037717	1.00[AMR][1000 genomes]
rs8039169	1.00[AMR][1000 genomes]
rs9672224	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904102	chr15:41046883-41201699	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv1054764	chr15:41068625-41196410	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv569228	chr15:41106485-41194151	Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41135600-41140400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:41136800-41140400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr15:41137000-41140800	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
4	chr15:41137400-41152200	Weak transcription	Small Intestine	intestine
5	chr15:41137400-41165800	Weak transcription	Right Atrium	heart
6	chr15:41137800-41140400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr15:41137800-41140600	Enhancers	Primary hematopoietic stem cells	blood
8	chr15:41138000-41140400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:41138000-41140800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:41138000-41140800	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:41138600-41140400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:41138800-41140400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr15:41138800-41140600	Enhancers	Fetal Thymus	thymus
14	chr15:41138800-41140600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
15	chr15:41139000-41140400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr15:41139200-41140400	Flanking Active TSS	K562	blood
17	chr15:41139400-41140400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:41139400-41140400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr15:41139400-41140800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:41139600-41142400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:41139800-41140400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:41139800-41140600	Active TSS	Esophagus	oesophagus
23	chr15:41139800-41140600	Enhancers	Fetal Kidney	kidney
24	chr15:41140000-41140400	Enhancers	Pancreas	Pancrea
25	chr15:41140000-41140400	Enhancers	GM12878-XiMat	blood
26	chr15:41140000-41140400	Enhancers	HMEC	breast
27	chr15:41140000-41140600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr15:41140000-41140600	Flanking Active TSS	Colonic Mucosa	Colon
29	chr15:41140000-41140600	Flanking Active TSS	Fetal Intestine Large	intestine
30	chr15:41140000-41140600	Enhancers	HepG2	liver
31	chr15:41140000-41140800	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr15:41140000-41140800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
33	chr15:41140000-41140800	Enhancers	Stomach Mucosa	stomach
34	chr15:41140000-41141400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr15:41140000-41142600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr15:41140000-41142600	Weak transcription	Lung	lung
37	chr15:41140000-41144600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr15:41140000-41145200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr15:41140000-41149800	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr15:41140000-41149800	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr15:41140000-41150400	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr15:41140200-41140400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
43	chr15:41140200-41140600	Genic enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr15:41140200-41140600	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr15:41140200-41140600	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr15:41140200-41140600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr15:41140200-41140600	Active TSS	Duodenum Mucosa	Duodenum
48	chr15:41140200-41140600	Genic enhancers	Placenta	Placenta
49	chr15:41140200-41140600	Genic enhancers	NHEK	skin
50	chr15:41140200-41140800	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links