Variant report

Variant	rs9672224
Chromosome Location	chr15:40957541-40957542
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10220885	1.00[EUR][1000 genomes]
rs12323939	1.00[EUR][1000 genomes]
rs16971119	1.00[EUR][1000 genomes]
rs45501094	1.00[EUR][1000 genomes]
rs45571032	1.00[EUR][1000 genomes]
rs45604436	1.00[EUR][1000 genomes]
rs55896567	1.00[EUR][1000 genomes]
rs55906732	1.00[EUR][1000 genomes]
rs56020318	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56229816	1.00[EUR][1000 genomes]
rs56908156	0.82[AFR][1000 genomes]
rs57022654	1.00[AMR][1000 genomes]
rs57242620	1.00[EUR][1000 genomes]
rs57288992	1.00[EUR][1000 genomes]
rs58097169	1.00[EUR][1000 genomes]
rs58101670	0.97[AFR][1000 genomes]
rs58375351	1.00[EUR][1000 genomes]
rs58681580	1.00[EUR][1000 genomes]
rs58738238	1.00[EUR][1000 genomes]
rs58893179	1.00[AMR][1000 genomes]
rs59204074	1.00[AMR][1000 genomes]
rs59508492	1.00[EUR][1000 genomes]
rs59528823	1.00[EUR][1000 genomes]
rs59558714	1.00[EUR][1000 genomes]
rs60109064	1.00[EUR][1000 genomes]
rs60111609	1.00[EUR][1000 genomes]
rs60163307	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60578270	1.00[EUR][1000 genomes]
rs60822673	1.00[EUR][1000 genomes]
rs6492962	0.85[YRI][hapmap];1.00[EUR][1000 genomes]
rs6492963	1.00[EUR][1000 genomes]
rs7161941	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs7162253	1.00[AMR][1000 genomes]
rs7162308	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7164574	1.00[EUR][1000 genomes]
rs7166733	1.00[EUR][1000 genomes]
rs7167831	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168217	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7169273	1.00[EUR][1000 genomes]
rs7171451	0.85[YRI][hapmap];1.00[EUR][1000 genomes]
rs7171898	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs7172356	1.00[EUR][1000 genomes]
rs7178058	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7178244	0.85[YRI][hapmap];1.00[EUR][1000 genomes]
rs7182066	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs7182516	1.00[EUR][1000 genomes]
rs74011880	1.00[EUR][1000 genomes]
rs74011881	1.00[EUR][1000 genomes]
rs74011884	1.00[EUR][1000 genomes]
rs74011886	1.00[EUR][1000 genomes]
rs74011887	1.00[EUR][1000 genomes]
rs74011888	1.00[EUR][1000 genomes]
rs74011889	1.00[AMR][1000 genomes]
rs74011890	1.00[AMR][1000 genomes]
rs74011893	1.00[AMR][1000 genomes]
rs74011933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74011936	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8025846	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs8030491	0.87[AFR][1000 genomes]
rs8033915	0.84[AFR][1000 genomes]
rs8035580	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs8037717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8037881	1.00[AMR][1000 genomes]
rs8038751	1.00[EUR][1000 genomes]
rs8039169	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8039942	1.00[EUR][1000 genomes]
rs8040579	1.00[EUR][1000 genomes]
rs8040925	1.00[EUR][1000 genomes]
rs9744142	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2758378	chr15:40832545-40995111	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv2760026	chr15:40832545-40995111	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1841263	chr15:40902453-40966765	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1053173	chr15:40933163-41094127	Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
6	nsv542363	chr15:40933163-41094127	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
7	nsv904099	chr15:40949526-41041875	Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv529030	chr15:40956471-41012695	Active TSS Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40887800-40961600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:40913800-40986000	Weak transcription	A549	lung
3	chr15:40914400-40960000	Weak transcription	NHLF	lung
4	chr15:40919200-40957600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:40926000-40958800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:40928600-40958000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:40941400-40957600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:40942000-40959000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:40943000-40971400	Weak transcription	Primary B cells from cord blood	blood
10	chr15:40945000-40984200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:40945200-40961400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:40946600-40957600	Weak transcription	HSMM	muscle
13	chr15:40946600-40957600	Weak transcription	NH-A	brain
14	chr15:40946600-40959800	Weak transcription	Gastric	stomach
15	chr15:40950000-40958600	Weak transcription	HUVEC	blood vessel
16	chr15:40950000-40958800	Weak transcription	HepG2	liver
17	chr15:40950000-40981200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:40950200-40964200	Weak transcription	Osteobl	bone
19	chr15:40951800-40957800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr15:40953000-40960200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:40953800-40960000	Weak transcription	Fetal Muscle Leg	muscle
22	chr15:40954600-40959800	Weak transcription	NHEK	skin
23	chr15:40954800-40958200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr15:40954800-40958400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:40954800-40959600	Weak transcription	Liver	Liver
26	chr15:40954800-40960000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr15:40955000-40957600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr15:40955000-40958600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr15:40955200-40957600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr15:40955200-40958000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr15:40955200-40958200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:40955200-40958200	Weak transcription	Thymus	Thymus
33	chr15:40955200-40959800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr15:40955200-40961000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:40955200-40964400	Weak transcription	GM12878-XiMat	blood
36	chr15:40955200-40976600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:40955200-40983200	Weak transcription	Fetal Intestine Small	intestine
38	chr15:40955400-40960400	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr15:40955600-40959400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr15:40955800-40976000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr15:40956800-40960400	Weak transcription	Fetal Thymus	thymus
42	chr15:40956800-40963000	Weak transcription	Hela-S3	cervix
43	chr15:40956800-40966000	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr15:40956800-40971200	Weak transcription	Dnd41	blood
45	chr15:40957200-40957600	Enhancers	K562	blood
46	chr15:40957200-40958000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:40957200-40960600	Weak transcription	Fetal Stomach	stomach
48	chr15:40957400-40959800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr15:40957400-40959800	Weak transcription	Primary monocytes fromperipheralblood	blood

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